ssaha
EnsemblServer/ClientServerUtils.cpp
EnsemblServer/ClientServerUtils.h
EnsemblServer/SSAHAWrapper.cpp
HashTable/HashTableGeneric.cpp
HashTable/HashTableTranslated.cpp
HashTable/HashTableTranslated.h
HashTable/testHashTableNoOverlap.cpp
QueryManager/MatchStoreGapped.cpp
QueryManager/MatchStoreGapped.h
QueryManager/MatchStoreUngapped.cpp
QueryManager/MatchStoreUngapped.h
QueryManager/testQueryManager.cpp
SequenceReader/GenerateTestFastaFiles.cpp
SequenceReader/GenerateTestFastaFiles.h
SequenceReader/SequenceEncoder.cpp
SequenceReader/SequenceEncoder.h
SequenceReader/SequenceReader.cpp
SequenceReader/SequenceReader.h
SequenceReader/SequenceReaderFasta.cpp
SequenceReader/SequenceReaderFasta.h
SequenceReader/SequenceReaderFastq.cpp
SequenceReader/SequenceReaderFastq.h
SequenceReader/SequenceReaderFilter.cpp
SequenceReader/SequenceReaderFilter.h
SequenceReader/SequenceReaderLocal.cpp
SequenceReader/SequenceReaderLocal.h
SequenceReader/SequenceReaderMulti.cpp
SequenceReader/SequenceReaderMulti.h
SequenceReader/SequenceReaderString.cpp