SequenceEncoderDNA Class Reference

#include <SequenceEncoder.h>

Inheritance diagram for SequenceEncoderDNA:

[legend]Collaboration diagram for SequenceEncoderDNA:

[legend]List of all members.

Public Member Functions
	SequenceEncoderDNA (int wordLength=10, ostream &monStream=cerr)
Static Protected Attributes
static ExpandedTranslationTable	ettSource_
static bool	isExpanded_ = false

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Detailed Description

Definition at line 467 of file SequenceEncoder.h.

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Constructor & Destructor Documentation

SequenceEncoderDNA::SequenceEncoderDNA	(	int	wordLength = 10,
		ostream &	monStream = cerr
	)

Definition at line 107 of file SequenceEncoder.cpp.

References SequenceEncoder::ett_, SequenceEncoder::expandTranslationTable(), and SequenceEncoder::monitoringStream_.

                                       :
  SequenceEncoder( &ttDNA, gDNAData, gBaseBits, wordLength, monStream ) 
{
  monitoringStream_ << "constructing SequenceEncoderDNA" << endl;
  ett_ = &ettSource_;
  if (!isExpanded_)
  {
    expandTranslationTable( ettSource_ );
    isExpanded_ = true;
  }
}

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Member Data Documentation

ExpandedTranslationTable SequenceEncoderDNA::ettSource_ [static, protected]

Definition at line 473 of file SequenceEncoder.h.

bool SequenceEncoderDNA::isExpanded_ = false [static, protected]

Definition at line 474 of file SequenceEncoder.h.

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The documentation for this class was generated from the following files:

• SequenceReader/SequenceEncoder.h
• SequenceReader/SequenceEncoder.cpp

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