| doQuery(MatchAlgorithm &match, MatchTask &task, int queryStart=1, int queryEnd=-1) | QueryManager | |
| monitoringStream_ | QueryManager | |
| operator=(const QueryManager &) | QueryManager | [private] |
| policy_ | QueryManager | [protected] |
| QueryManager(SequenceReader &querySeqs, HashTableGeneric &subjectSeqs, ostream &monitoringStream=cerr) | QueryManager | |
| QueryManager(const QueryManager &) | QueryManager | [private] |
| queryReader_ | QueryManager | [protected] |
| subjectTable_ | QueryManager | |
| ~QueryManager() | QueryManager | [virtual] |
1.5.2