NameReaderLocal Class Reference

#include <HashTableGeneric.h>

Inheritance diagram for NameReaderLocal:

[legend]Collaboration diagram for NameReaderLocal:

[legend]List of all members.

Public Member Functions
virtual	~NameReaderLocal ()
virtual const char *	getSequenceName (SequenceNumber seqNum) const
virtual void	getSequenceName (string &seqName, SequenceNumber seqNum) const
string &	lastName ()
virtual void	saveSequenceNames (ostream &nameFile)
virtual void	loadSequenceNames (istream &nameFile)
virtual SequenceNumber	size (void) const
void	pop_back (void)

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Detailed Description

Definition at line 69 of file HashTableGeneric.h.

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Constructor & Destructor Documentation

virtual NameReaderLocal::~NameReaderLocal

(

)

[inline, virtual]

Definition at line 72 of file HashTableGeneric.h.

{}

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Member Function Documentation

const char * NameReaderLocal::getSequenceName

(

SequenceNumber

seqNum

)

const [virtual]

Reimplemented from NameReader.

Definition at line 1042 of file HashTableGeneric.cpp.

References SequenceAdapterWithOverlap::size().

{
  //  assert(seqNum<size());
  if (seqNum <= size() )
  {
    return (*this)[seqNum-1].c_str();
  } // ~if
  return NULL;

} // ~const char* NameReaderLocal::getSequenceName

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void NameReaderLocal::getSequenceName	(	string &	seqName,
		SequenceNumber	seqNum
	)			const [virtual]

Reimplemented from NameReader.

Definition at line 1054 of file HashTableGeneric.cpp.

References SequenceAdapterWithOverlap::size().

{
  //  assert(seqNum<size());
  if (seqNum <= size() )
  {
    seqName = (*this)[seqNum-1];
    return;
  }
  seqName = "No sequence name stored for sequence.";
} // ~NameReaderLocal::getSequenceName

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string& NameReaderLocal::lastName

(

)

[inline]

Definition at line 77 of file HashTableGeneric.h.

Referenced by HashTableTranslated::countWordsAndGetNames(), HashTableGeneric::countWordsAndGetNames(), and loadSequenceNames().

  { 
    string dummy = "";
    push_back(dummy); return back(); 
  }

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void NameReaderLocal::saveSequenceNames

(

ostream &

nameFile

)

[virtual]

Reimplemented from NameReader.

Definition at line 1080 of file HashTableGeneric.cpp.

{
  for ( vector<string>::iterator i = begin() ; 
        i != end() ; i ++ )
  {
    nameFile << *i << endl;
  }
} // ~NameReaderLocal::saveSequenceNames( ostream& nameFile )

void NameReaderLocal::loadSequenceNames

(

istream &

nameFile

)

[virtual]

Reimplemented from NameReader.

Definition at line 1089 of file HashTableGeneric.cpp.

References lastName(), and pop_back().

{
  while( getline( nameFile, lastName() ) );
  pop_back();
    //    while( getline( nameFile,*(sequenceNames_.back() ) ) )
    //   {
    //    sequenceNames_.push_back( new string );
    //   } // ~while

    //    sequenceNames_.pop_back();

  //    pNameReader->loadSequenceNames( nameFile );

  //    monitoringStream_ << "Loaded in "  
  //          << size() 
  //          << " sequence names).\n";


} // ~NameReaderLocal::loadSequenceNames( istream& inFile )

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virtual SequenceNumber NameReaderLocal::size

(

void

)

const [inline, virtual]

Reimplemented from NameReader.

Definition at line 85 of file HashTableGeneric.h.

  {
    return vector<string>::size();
  }

void NameReaderLocal::pop_back

(

void

)

[inline]

Definition at line 89 of file HashTableGeneric.h.

Referenced by loadSequenceNames().

  {
    vector<string>::pop_back();
  }

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The documentation for this class was generated from the following files:

• HashTable/HashTableGeneric.h
• HashTable/HashTableGeneric.cpp

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