MatchTaskTest Class Reference

Inheritance diagram for MatchTaskTest:

[legend]Collaboration diagram for MatchTaskTest:

[legend]List of all members.

Public Member Functions
	MatchTaskTest (BaseGenerator &bases, int numSeqs, int seqSize)
void	operator() (MatchStore &store)
Public Attributes
BaseGenerator	bases_
int	numSeqs_
int	seqSize_

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Detailed Description

Definition at line 69 of file testQueryManager.cpp.

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Constructor & Destructor Documentation

MatchTaskTest::MatchTaskTest	(	BaseGenerator &	bases,
		int	numSeqs,
		int	seqSize
	)			[inline]

Definition at line 73 of file testQueryManager.cpp.

                                                     : 
    bases_( bases ), numSeqs_( numSeqs ), seqSize_( seqSize ) {}

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Member Function Documentation

void MatchTaskTest::operator()

(

MatchStore &

store

)

[virtual]

Implements MatchTask.

Definition at line 93 of file testQueryManager.cpp.

References bases_, BaseGenerator::getBases(), MatchStore::printResult(), reverseString(), and seqSize_.

{

  store.printResult(cout);

  string queryMatch, subjectMatch;

  for (MatchStore::const_iterator i( store.begin() ) ; i!=store.end() ; ++i )
  {
    cout << store.size() << endl;

    cout << (*i)->getQueryNum() << ": " << (*i)->getQueryName()
         << " "
         << (*i)->getQueryStart() << "-" << (*i)->getQueryEnd() 
         << "\t= "
         << (*i)->getSubjectNum() << ": " << (*i)->getSubjectName()
         << " " 
         << (*i)->getSubjectStart() << "-" << (*i)->getSubjectEnd();

    if ( (*i)->isQueryForward() )
    {
      bases_.getBases
        ( ( (*i)->getQueryNum() - 1 ) * seqSize_ + (*i)->getQueryStart() - 1,
          ( (*i)->getQueryEnd() - (*i)->getQueryStart() + 1 ),
          queryMatch  );
    } // ~if
    else
    {
          bases_.getBases
          ( ( (*i)->getQueryNum() - 1 ) * seqSize_ 
             + ( seqSize_ 
                 - ( (*i)->getQueryStart() + (*i)->getNumBases() - 1 )  ),
             (*i)->getNumBases(),
             queryMatch  );

          reverseString(queryMatch);
    }


  bases_.getBases
  ( ( (*i)->getSubjectNum() - 1 ) * seqSize_ + (*i)->getSubjectStart() - 1,
    ( (*i)->getSubjectEnd() - (*i)->getSubjectStart() + 1 ),
    subjectMatch  );

  assert (queryMatch == subjectMatch);

  //  if( queryMatch == subjectMatch ) cout << "YES!"; 
  //  else cout << "NO!";

  cout << endl;


  } // ~for



};

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Member Data Documentation

BaseGenerator MatchTaskTest::bases_

Definition at line 77 of file testQueryManager.cpp.

Referenced by operator()().

int MatchTaskTest::numSeqs_

Definition at line 78 of file testQueryManager.cpp.

int MatchTaskTest::seqSize_

Definition at line 79 of file testQueryManager.cpp.

Referenced by operator()().

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The documentation for this class was generated from the following file:

• QueryManager/testQueryManager.cpp

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