MatchTaskPrintReverse Class Reference

#include <MatchStore.h>

Inheritance diagram for MatchTaskPrintReverse:

[legend]Collaboration diagram for MatchTaskPrintReverse:

[legend]List of all members.

Public Member Functions
	MatchTaskPrintReverse (ostream &outputStream=cout)
virtual void	operator() (MatchStore &store)
Private Attributes
ostream &	outputStream_

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Detailed Description

Definition at line 304 of file MatchStore.h.

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Constructor & Destructor Documentation

MatchTaskPrintReverse::MatchTaskPrintReverse

(

ostream &

outputStream = cout

)

[inline]

Definition at line 307 of file MatchStore.h.

00307                                                         :
00308     outputStream_( outputStream ) {}
  virtual void operator()( MatchStore& store );

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Member Function Documentation

void MatchTaskPrintReverse::operator()

(

MatchStore &

store

)

[virtual]

Implements MatchTask.

Definition at line 243 of file MatchStore.cpp.

References outputStream_.

{
  if (store.empty()) return;

  vector<Match*>::const_iterator i(store.begin());

  outputStream_ << endl << "Matches For Query " 
               << (*i)->getQueryNum()
               << " (" << (*i)->getQuerySize()
               << " bases): " << (*i)->getQueryName()
               << "\n\n";    

  outputStream_ << setprecision(2) << setiosflags(ios::fixed);

  for( ;i!=store.end();++i)
  {
    outputStream_ << (((*i)->isQueryForward() )?"F":"R")
                  << (((*i)->isSubjectForward() )?"F":"R")
                  <<" " << (*i)->getSubjectNum() 
                  << "\t: " << (*i)->getSubjectName()
                  << "\tScore: " << (*i)->getNumBases()
                  << "\tQ: " 
                  << ( (*i)->isQueryForward() ? (*i)->getQueryStart()  
                     : (*i)->getQuerySize()-(*i)->getQueryEnd()+1 )     
                  << " to " 
                  << ( (*i)->isQueryForward() ? (*i)->getQueryEnd()  
                     : (*i)->getQuerySize()-(*i)->getQueryStart()+1 )     
                  << "\tS: " << (*i)->getSubjectStart()  
                  << " to " << (*i)->getSubjectEnd()  
                  << "\t" << 100.0*((*i)->getNumBases()) / 
                    ((*i)->getQueryEnd()-(*i)->getQueryStart()+1)
                  << "\%\n"; 

  }  // ~for i
   
  outputStream_ << endl;


}

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Member Data Documentation

ostream& MatchTaskPrintReverse::outputStream_ [private]

Definition at line 311 of file MatchStore.h.

Referenced by operator()().

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The documentation for this class was generated from the following files:

• QueryManager/MatchStore.h
• QueryManager/MatchStore.cpp

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