#include <MatchStore.h>
Inheritance diagram for MatchTaskPrint:
Public Member Functions | |
| MatchTaskPrint (ostream &outputStream=cout) | |
| virtual void | operator() (MatchStore &store) |
Private Attributes | |
| ostream & | outputStream_ |
Definition at line 280 of file MatchStore.h.
| MatchTaskPrint::MatchTaskPrint | ( | ostream & | outputStream = cout |
) | [inline] |
Definition at line 283 of file MatchStore.h.
00283 : 00284 outputStream_( outputStream ) {} virtual void operator()( MatchStore& store );
| void MatchTaskPrint::operator() | ( | MatchStore & | store | ) | [virtual] |
Implements MatchTask.
Definition at line 185 of file MatchStore.cpp.
References outputStream_.
00186 { 00187 if (store.empty()) return; 00188 00189 vector<Match*>::const_iterator i(store.begin()); 00190 00191 outputStream_ << endl << "Matches For Query " 00192 << (*i)->getQueryNum() 00193 << " (" << (*i)->getQuerySize() 00194 << " bases): " << (*i)->getQueryName() 00195 << "\n\n"; 00196 00197 outputStream_ << setprecision(2) << setiosflags(ios::fixed); 00198 00199 for( ;i!=store.end();++i) 00200 { 00201 00202 outputStream_ << (((*i)->isQueryForward() )?"F":"R") 00203 << (((*i)->isSubjectForward() )?"F":"R") 00204 << " " << (*i)->getSubjectNum() 00205 << "\t: " << (*i)->getSubjectName() 00206 << "\tScore: " << (*i)->getNumBases() 00207 << "\tQ: " << (*i)->getQueryStart() 00208 << " to " << (*i)->getQueryEnd() 00209 << "\tS: " << (*i)->getSubjectStart() 00210 << " to " << (*i)->getSubjectEnd() 00211 << "\t" << 100.0*((*i)->getNumBases()) / 00212 ((*i)->getQueryEnd()-(*i)->getQueryStart()+1) 00213 << "\%\n"; 00214 00215 } // ~for i 00216 00217 outputStream_ << endl; 00218 00219 00220 }
ostream& MatchTaskPrint::outputStream_ [private] |
1.5.2