| addMatch(SequenceNumber subjectNum, SequenceOffset numBases, SequenceOffset queryStart, SequenceOffset queryEnd, SequenceOffset subjectStart, SequenceOffset subjectEnd, bool isQueryForward, bool isSubjectForward) | MatchStoreImp | [virtual] |
| clear(void) | MatchStoreImp | [virtual] |
| imps_ | MatchStoreImp | [protected] |
| MatchImp class | MatchStoreImp | [friend] |
| MatchStoreImp(string queryName, int queryNum, int queryBases, const NameReader &reader) | MatchStoreImp | [inline] |
| printResult(ostream &outputStream=cout) const | MatchStoreImp | [virtual] |
| queryBases_ | MatchStoreImp | [protected] |
| queryName_ | MatchStoreImp | [protected] |
| queryNum_ | MatchStoreImp | [protected] |
| reader_ | MatchStoreImp | [protected] |
| setup(void) | MatchStoreImp | |
| ~MatchStore() | MatchStore | [inline, virtual] |
| ~MatchStoreImp() | MatchStoreImp |
1.5.2