MatchPolicyProteinProtein Class Reference

#include <QueryManager.h>

Inheritance diagram for MatchPolicyProteinProtein:

[legend]Collaboration diagram for MatchPolicyProteinProtein:

[legend]List of all members.

Public Member Functions
	MatchPolicyProteinProtein (HashTablePackedProtein &subjectTable)
virtual void	operator() (WordSequence &querySeqFwd, MatchStore &store, MatchAlgorithm &findMatch)
Protected Attributes
HashTablePackedProtein &	subjectTable_

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Detailed Description

Definition at line 269 of file QueryManager.h.

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Constructor & Destructor Documentation

MatchPolicyProteinProtein::MatchPolicyProteinProtein

(

HashTablePackedProtein &

subjectTable

)

Definition at line 205 of file QueryManager.cpp.

References MatchPolicy::addMatch_, and MatchPolicy::subjectTable_.

                                         :
subjectTable_( subjectTable ),
MatchPolicy( subjectTable )
{

  subjectTable_.setQueryProtein();
  addMatch_ = new MatchAdderImp(subjectTable_);
}

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Member Function Documentation

void MatchPolicyProteinProtein::operator()	(	WordSequence &	querySeqFwd,
		MatchStore &	store,
		MatchAlgorithm &	findMatch
	)			[virtual]

Implements MatchPolicy.

Definition at line 215 of file QueryManager.cpp.

References MatchPolicy::addMatch_, MatchAdder::link(), MatchAdder::setQueryForward(), and MatchPolicy::subjectTable_.

{

  addMatch_->link(store);
  addMatch_->setQueryForward();

  findMatch( querySeqFwd, *addMatch_, subjectTable_ ); 

} // ~QueryManager::doMatch

Here is the call graph for this function:

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Member Data Documentation

HashTablePackedProtein& MatchPolicyProteinProtein::subjectTable_ [protected]

Reimplemented from MatchPolicy.

Definition at line 279 of file QueryManager.h.

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The documentation for this class was generated from the following files:

• QueryManager/QueryManager.h
• QueryManager/QueryManager.cpp

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