MatchPolicy Class Reference

#include <QueryManager.h>

Inheritance diagram for MatchPolicy:

[legend]Collaboration diagram for MatchPolicy:

[legend]List of all members.

Public Member Functions
	MatchPolicy (HashTableGeneric &subjectTable)
virtual	~MatchPolicy ()
virtual void	operator() (WordSequence &querySeqFwd, MatchStore &store, MatchAlgorithm &findMatch)=0
int	getWordLength (void) const
Protected Attributes
int	queryWordLength_
HashTableGeneric &	subjectTable_
MatchAdder *	addMatch_

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Detailed Description

Definition at line 240 of file QueryManager.h.

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Constructor & Destructor Documentation

MatchPolicy::MatchPolicy

(

HashTableGeneric &

subjectTable

)

Definition at line 166 of file QueryManager.cpp.

                                                         :
  subjectTable_( subjectTable ), 
  queryWordLength_( subjectTable.getWordLength() ) 
{}

virtual MatchPolicy::~MatchPolicy

(

)

[inline, virtual]

Definition at line 244 of file QueryManager.h.

References addMatch_.

{ delete addMatch_; }

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Member Function Documentation

virtual void MatchPolicy::operator()	(	WordSequence &	querySeqFwd,
		MatchStore &	store,
		MatchAlgorithm &	findMatch
	)			[pure virtual]

Implemented in MatchPolicyDNADNA, MatchPolicyProteinProtein, MatchPolicyDNAProtein, MatchPolicyDNATranslated, and MatchPolicyProteinTranslated.

int MatchPolicy::getWordLength

(

void

)

const [inline]

Definition at line 249 of file QueryManager.h.

References queryWordLength_.

{ return queryWordLength_; }

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Member Data Documentation

int MatchPolicy::queryWordLength_ [protected]

Definition at line 251 of file QueryManager.h.

Referenced by getWordLength(), MatchPolicyDNAProtein::MatchPolicyDNAProtein(), MatchPolicyDNATranslated::MatchPolicyDNATranslated(), MatchPolicyDNAProtein::operator()(), and MatchPolicyDNADNA::operator()().

HashTableGeneric& MatchPolicy::subjectTable_ [protected]

Reimplemented in MatchPolicyProteinProtein, MatchPolicyDNAProtein, MatchPolicyDNATranslated, and MatchPolicyProteinTranslated.

Definition at line 252 of file QueryManager.h.

Referenced by MatchPolicyDNADNA::MatchPolicyDNADNA(), MatchPolicyDNAProtein::MatchPolicyDNAProtein(), MatchPolicyDNATranslated::MatchPolicyDNATranslated(), MatchPolicyProteinProtein::MatchPolicyProteinProtein(), MatchPolicyProteinTranslated::MatchPolicyProteinTranslated(), MatchPolicyDNATranslated::operator()(), MatchPolicyProteinTranslated::operator()(), MatchPolicyDNAProtein::operator()(), MatchPolicyProteinProtein::operator()(), MatchPolicyDNADNA::operator()(), and QueryManager::QueryManager().

MatchAdder* MatchPolicy::addMatch_ [protected]

Definition at line 253 of file QueryManager.h.

Referenced by MatchPolicyDNADNA::MatchPolicyDNADNA(), MatchPolicyDNAProtein::MatchPolicyDNAProtein(), MatchPolicyDNATranslated::MatchPolicyDNATranslated(), MatchPolicyProteinProtein::MatchPolicyProteinProtein(), MatchPolicyProteinTranslated::MatchPolicyProteinTranslated(), MatchPolicyDNATranslated::operator()(), MatchPolicyProteinTranslated::operator()(), MatchPolicyDNAProtein::operator()(), MatchPolicyProteinProtein::operator()(), MatchPolicyDNADNA::operator()(), and ~MatchPolicy().

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The documentation for this class was generated from the following files:

• QueryManager/QueryManager.h
• QueryManager/QueryManager.cpp

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