| getNumBases(void) const | MatchImp | [inline, virtual] |
| getQueryEnd(void) const | MatchImp | [inline, virtual] |
| getQueryName(void) const | MatchImp | [inline, virtual] |
| getQueryNum(void) const | MatchImp | [inline, virtual] |
| getQuerySize(void) const | MatchImp | [inline, virtual] |
| getQueryStart(void) const | MatchImp | [inline, virtual] |
| getSubjectEnd(void) const | MatchImp | [inline, virtual] |
| getSubjectName(void) const | MatchImp | [inline, virtual] |
| getSubjectNum(void) const | MatchImp | [inline, virtual] |
| getSubjectStart(void) const | MatchImp | [inline, virtual] |
| isQueryForward(void) const | MatchImp | [inline, virtual] |
| isQueryForward_ | MatchImp | |
| isSubjectForward(void) const | MatchImp | [inline, virtual] |
| isSubjectForward_ | MatchImp | |
| MatchImp(MatchStoreImp *myStore, SequenceNumber subjectNum, SequenceOffset numBases, SequenceOffset queryStart, SequenceOffset queryEnd, SequenceOffset subjectStart, SequenceOffset subjectEnd, bool isQueryForward, bool isSubjectForward) | MatchImp | [inline] |
| myStore_ | MatchImp | |
| numBases_ | MatchImp | |
| print(void) const | MatchImp | [inline, virtual] |
| queryEnd_ | MatchImp | |
| queryStart_ | MatchImp | |
| subjectEnd_ | MatchImp | |
| subjectNum_ | MatchImp | |
| subjectStart_ | MatchImp | |
| ~Match() | Match | [inline, virtual] |
| ~MatchImp() | MatchImp | [inline, virtual] |
1.5.2