MatchAlgorithmUngapped Member List

This is the complete list of members for MatchAlgorithmUngapped, including all inherited members.

Generated on Fri Dec 21 13:18:12 2007 for ssaha by

generateHits(WordSequence &querySeq, HitListVector &hitList, HashTableGeneric &subjectTable)	MatchAlgorithm
generateMatches(HitListVector &hitList, MatchAdder &addMatch)	MatchAlgorithmUngapped	`[virtual]`
MatchAlgorithm(int numRepeats)	MatchAlgorithm	`[inline]`
MatchAlgorithmUngapped(int minToProcess, int numRepeats)	MatchAlgorithmUngapped	`[inline]`
minToProcess_	MatchAlgorithmUngapped	`[private]`
numRepeats_	MatchAlgorithm	`[protected]`
operator()(WordSequence &querySeq, MatchAdder &addMatch, HashTableGeneric &subjectTable, int wordLength=-1, int stepLength=-1)	MatchAlgorithm
sortNeeded_	MatchAlgorithm	`[protected]`
stepLength_	MatchAlgorithm	`[protected]`
wordLength_	MatchAlgorithm	`[protected]`