MatchAdderImp Class Reference

#include <QueryManager.h>

Inheritance diagram for MatchAdderImp:

[legend]Collaboration diagram for MatchAdderImp:

[legend]List of all members.

Public Member Functions
	MatchAdderImp (HashTableGeneric &subjectTable)
virtual void	operator() (SequenceNumber subjectNum, SequenceOffset numBases, SequenceOffset queryStart, SequenceOffset queryEnd, SequenceOffset subjectStart, SequenceOffset subjectEnd)
Protected Attributes
string	name_
SequenceNumber	lastSubjectNum_

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Detailed Description

Definition at line 171 of file QueryManager.h.

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Constructor & Destructor Documentation

MatchAdderImp::MatchAdderImp

(

HashTableGeneric &

subjectTable

)

[inline]

Definition at line 174 of file QueryManager.h.

                                                  : 
    lastSubjectNum_(0), name_(), MatchAdder( subjectTable ) {}

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Member Function Documentation

void MatchAdderImp::operator()	(	SequenceNumber	subjectNum,
		SequenceOffset	numBases,
		SequenceOffset	queryStart,
		SequenceOffset	queryEnd,
		SequenceOffset	subjectStart,
		SequenceOffset	subjectEnd
	)			[virtual]

Implements MatchAdder.

Reimplemented in MatchAdderCodonProtein, MatchAdderProteinCodon, and MatchAdderCodonCodon.

Definition at line 46 of file QueryManager.cpp.

References MatchStore::addMatch(), MatchAdder::isQueryForward_, and MatchAdder::pStore_.

{
  //  if (subjectNum!=lastSubjectNum_)
  //   subjectTable_.getSequenceName(name_,subjectNum);
  //  lastSubjectNum_=subjectNum;
  pStore_->addMatch( // name_,
                     subjectNum, 
                     numBases, 
                     queryStart, 
                     queryEnd, 
                     subjectStart, 
                     subjectEnd, 
                     isQueryForward_, 
                     true );

} // ~void MatchAdderImp::operator()

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Member Data Documentation

string MatchAdderImp::name_ [protected]

Definition at line 185 of file QueryManager.h.

SequenceNumber MatchAdderImp::lastSubjectNum_ [protected]

Definition at line 186 of file QueryManager.h.

Referenced by MatchAdderProteinCodon::operator()(), and MatchAdderCodonCodon::operator()().

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The documentation for this class was generated from the following files:

• QueryManager/QueryManager.h
• QueryManager/QueryManager.cpp

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