ssaha: MatchAdderCodonProtein Class Reference

MatchAdderCodonProtein::MatchAdderCodonProtein ( HashTableGeneric & subjectTable )

Definition at line 75 of file QueryManager.cpp.

00075                                                                                :
00076 MatchAdderImp( subjectTable ) {}

void MatchAdderCodonProtein::operator()	(	SequenceNumber	subjectNum,
		SequenceOffset	numBases,
		SequenceOffset	queryStart,
		SequenceOffset	queryEnd,
		SequenceOffset	subjectStart,
		SequenceOffset	subjectEnd
	)			`[virtual]`

Reimplemented from MatchAdderImp.

Definition at line 79 of file QueryManager.cpp.

References MatchStore::addMatch(), gNumReadingFrames, MatchAdder::isQueryForward_, and MatchAdder::pStore_.

00085 {
00086   //  if (subjectNum!=lastSubjectNum_)
00087   //    subjectTable_.getSequenceName(name_,subjectNum);
00088   //  lastSubjectNum_=subjectNum;
00089   pStore_->addMatch( // name_,
00090                      subjectNum, 
00091                      numBases, 
00092                      queryStart,
00093                      queryEnd, 
00094                      (subjectStart+2)/gNumReadingFrames, 
00095                      subjectEnd/gNumReadingFrames, 
00096                      isQueryForward_, true );
00097 } // ~void MatchAdderCodonProtein::operator()

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Public Member Functions
	MatchAdderCodonProtein (HashTableGeneric &subjectTable)
virtual void	operator() (SequenceNumber subjectNum, SequenceOffset numBases, SequenceOffset queryStart, SequenceOffset queryEnd, SequenceOffset subjectStart, SequenceOffset subjectEnd)

MatchAdderCodonProtein Class Reference

Public Member Functions

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation