MatchAdderCodonCodon Member List

This is the complete list of members for MatchAdderCodonCodon, including all inherited members.

Generated on Fri Dec 21 13:18:01 2007 for ssaha by

isQueryForward_	MatchAdder	`[protected]`
lastSubjectNum_	MatchAdderImp	`[protected]`
link(MatchStore &store)	MatchAdder	`[inline]`
MatchAdder(HashTableGeneric &subjectTable)	MatchAdder	`[inline]`
MatchAdderCodonCodon(HashTableTranslated &subjectTable)	MatchAdderCodonCodon
MatchAdderImp(HashTableGeneric &subjectTable)	MatchAdderImp	`[inline]`
name_	MatchAdderImp	`[protected]`
operator()(SequenceNumber subjectNum, SequenceOffset numBases, SequenceOffset queryStart, SequenceOffset queryEnd, SequenceOffset subjectStart, SequenceOffset subjectEnd)	MatchAdderCodonCodon	`[virtual]`
pStore_	MatchAdder	`[protected]`
querySize_	MatchAdder	`[protected]`
setQueryForward(void)	MatchAdder	`[inline]`
setQueryReverse(void)	MatchAdder	`[inline]`
setQuerySize(int size)	MatchAdder	`[inline]`
size_	MatchAdderCodonCodon	`[private]`
subjectTable_	MatchAdderCodonCodon	`[private]`