MatchAdder Class Reference

#include <QueryManager.h>

Inheritance diagram for MatchAdder:

[legend]Collaboration diagram for MatchAdder:

[legend]List of all members.

Public Member Functions
	MatchAdder (HashTableGeneric &subjectTable)
virtual void	operator() (SequenceNumber subjectNum, SequenceOffset numBases, SequenceOffset queryStart, SequenceOffset queryEnd, SequenceOffset subjectStart, SequenceOffset subjectEnd)=0
void	link (MatchStore &store)
void	setQueryForward (void)
void	setQueryReverse (void)
void	setQuerySize (int size)
Protected Attributes
bool	isQueryForward_
int	querySize_
MatchStore *	pStore_
HashTableGeneric &	subjectTable_

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Detailed Description

Definition at line 139 of file QueryManager.h.

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Constructor & Destructor Documentation

MatchAdder::MatchAdder

(

HashTableGeneric &

subjectTable

)

[inline]

Definition at line 142 of file QueryManager.h.

00142                                                :
00143     isQueryForward_(true),
00144     //    isSubjectForward_(true), 
00145     //    readFrame_(0), 
00146     pStore_(NULL), 
00147     subjectTable_( subjectTable ) {}
  virtual void operator()(  SequenceNumber subjectNum,

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Member Function Documentation

virtual void MatchAdder::operator()	(	SequenceNumber	subjectNum,
		SequenceOffset	numBases,
		SequenceOffset	queryStart,
		SequenceOffset	queryEnd,
		SequenceOffset	subjectStart,
		SequenceOffset	subjectEnd
	)			[pure virtual]

Implemented in MatchAdderImp, MatchAdderCodonProtein, MatchAdderProteinCodon, and MatchAdderCodonCodon.

void MatchAdder::link

(

MatchStore &

store

)

[inline]

Definition at line 154 of file QueryManager.h.

References pStore_.

Referenced by MatchPolicyDNATranslated::operator()(), MatchPolicyProteinTranslated::operator()(), MatchPolicyDNAProtein::operator()(), MatchPolicyProteinProtein::operator()(), and MatchPolicyDNADNA::operator()().

{ pStore_ = &store; }

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void MatchAdder::setQueryForward

(

void

)

[inline]

Definition at line 155 of file QueryManager.h.

References isQueryForward_.

Referenced by MatchPolicyDNATranslated::operator()(), MatchPolicyProteinTranslated::operator()(), MatchPolicyDNAProtein::operator()(), MatchPolicyProteinProtein::operator()(), and MatchPolicyDNADNA::operator()().

{ isQueryForward_=true; }

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void MatchAdder::setQueryReverse

(

void

)

[inline]

Definition at line 156 of file QueryManager.h.

References isQueryForward_.

Referenced by MatchPolicyDNATranslated::operator()(), MatchPolicyDNAProtein::operator()(), and MatchPolicyDNADNA::operator()().

{ isQueryForward_=false; }

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void MatchAdder::setQuerySize

(

int

size

)

[inline]

Definition at line 159 of file QueryManager.h.

References querySize_.

Referenced by MatchPolicyDNATranslated::operator()(), MatchPolicyProteinTranslated::operator()(), MatchPolicyDNAProtein::operator()(), and MatchPolicyDNADNA::operator()().

{ querySize_=size; }

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Member Data Documentation

bool MatchAdder::isQueryForward_ [protected]

Definition at line 162 of file QueryManager.h.

Referenced by MatchAdderCodonCodon::operator()(), MatchAdderCodonProtein::operator()(), MatchAdderImp::operator()(), setQueryForward(), and setQueryReverse().

int MatchAdder::querySize_ [protected]

Definition at line 165 of file QueryManager.h.

Referenced by setQuerySize().

MatchStore* MatchAdder::pStore_ [protected]

Definition at line 166 of file QueryManager.h.

Referenced by link(), MatchAdderProteinCodon::operator()(), MatchAdderCodonCodon::operator()(), MatchAdderCodonProtein::operator()(), and MatchAdderImp::operator()().

HashTableGeneric& MatchAdder::subjectTable_ [protected]

Reimplemented in MatchAdderProteinCodon, and MatchAdderCodonCodon.

Definition at line 167 of file QueryManager.h.

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The documentation for this class was generated from the following file:

• QueryManager/QueryManager.h

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