Match Class Reference

#include <MatchStore.h>

Inheritance diagram for Match:

[legend]List of all members.

Public Member Functions
virtual	~Match ()
virtual SequenceNumber	getSubjectNum (void) const=0
virtual const char *	getSubjectName (void) const=0
virtual SequenceOffset	getSubjectStart (void) const=0
virtual SequenceOffset	getSubjectEnd (void) const=0
virtual SequenceNumber	getQueryNum (void) const=0
virtual string	getQueryName (void) const=0
virtual SequenceOffset	getQueryStart (void) const=0
virtual SequenceOffset	getQueryEnd (void) const=0
virtual int	getQuerySize (void) const=0
virtual int	getNumBases (void) const=0
virtual bool	isQueryForward (void) const=0
virtual bool	isSubjectForward (void) const=0
virtual void	print (void) const=0

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Detailed Description

Definition at line 54 of file MatchStore.h.

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Constructor & Destructor Documentation

virtual Match::~Match

(

)

[inline, virtual]

Definition at line 57 of file MatchStore.h.

{}

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Member Function Documentation

virtual SequenceNumber Match::getSubjectNum

(

void

)

const [pure virtual]

Implemented in MatchImp, and MatchRemote.

Referenced by SortByMatch::operator()().

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virtual const char* Match::getSubjectName

(

void

)

const [pure virtual]

Implemented in MatchImp, and MatchRemote.

Referenced by SortBySubjectName::operator()().

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virtual SequenceOffset Match::getSubjectStart

(

void

)

const [pure virtual]

Implemented in MatchImp, and MatchRemote.

Referenced by SortByDiff::operator()().

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virtual SequenceOffset Match::getSubjectEnd

(

void

)

const [pure virtual]

Implemented in MatchImp, and MatchRemote.

virtual SequenceNumber Match::getQueryNum

(

void

)

const [pure virtual]

Implemented in MatchImp, and MatchRemote.

virtual string Match::getQueryName

(

void

)

const [pure virtual]

Implemented in MatchImp, and MatchRemote.

virtual SequenceOffset Match::getQueryStart

(

void

)

const [pure virtual]

Implemented in MatchImp, and MatchRemote.

Referenced by SortByMatch::operator()(), SortByPercentMatch::operator()(), SortByDiff::operator()(), and SortByQueryStart::operator()().

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virtual SequenceOffset Match::getQueryEnd

(

void

)

const [pure virtual]

Implemented in MatchImp, and MatchRemote.

Referenced by SortByPercentMatch::operator()().

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virtual int Match::getQuerySize

(

void

)

const [pure virtual]

Implemented in MatchImp, and MatchRemote.

virtual int Match::getNumBases

(

void

)

const [pure virtual]

Implemented in MatchImp, and MatchRemote.

Referenced by SortByMatch::operator()(), SortByPercentMatch::operator()(), and SortByMatchSize::operator()().

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virtual bool Match::isQueryForward

(

void

)

const [pure virtual]

Implemented in MatchImp, and MatchRemote.

virtual bool Match::isSubjectForward

(

void

)

const [pure virtual]

Implemented in MatchImp, and MatchRemote.

virtual void Match::print

(

void

)

const [pure virtual]

Implemented in MatchImp, and MatchRemote.

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The documentation for this class was generated from the following file:

• QueryManager/MatchStore.h

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