| bandExtension_ | ColumnFiller3D | [private] |
| bandLength_ | ColumnFiller3D | [private] |
| bandWidth_ | ColumnFiller3D | [private] |
| colSize_ | ColumnFiller3D | [private] |
| ColumnFiller3D(const char **p1Trans, int p1Size, int p1FinalFrame, const char **p2Trans, int p2Size, int p2FinalFrame, int bandExtension, const ScoreTable &scoreTable) | ColumnFiller3D | |
| fillCell3D(PathMatrix< PathType3D > &matrix, int i, int j) | ColumnFiller3D | [inline] |
| fillCell_ | ColumnFiller3D | [private] |
| finalFrame1_ | ColumnFiller3D | [private] |
| finalFrame2_ | ColumnFiller3D | [private] |
| getScore_ | ColumnFiller3D | [private] |
| getScoreChar(int i, int j, int k, int l) | ColumnFiller3D | [inline] |
| getScoreN(int j, int k, int l) | ColumnFiller3D | [inline] |
| getScorePrevFrame1(int j, int k, int l) | ColumnFiller3D | [inline] |
| getScorePrevFrame2(int j, int k, int l) | ColumnFiller3D | [inline] |
| getScoreSW(int j, int k, int l) | ColumnFiller3D | [inline] |
| getScoreW(int j, int k, int l) | ColumnFiller3D | [inline] |
| numFrames1_ | ColumnFiller3D | [private] |
| numFrames2_ | ColumnFiller3D | [private] |
| operator()(PathMatrix< PathType3D > &matrix) | ColumnFiller3D | |
| p1_ | ColumnFiller3D | [private] |
| p1Translations_ | ColumnFiller3D | [private] |
| p2_ | ColumnFiller3D | [private] |
| p2Translations_ | ColumnFiller3D | [private] |
| pCurrent_ | ColumnFiller3D | [private] |
| pLast_ | ColumnFiller3D | [private] |
| temp_ | ColumnFiller3D | [private] |
| v1_ | ColumnFiller3D | [private] |
| v2_ | ColumnFiller3D | [private] |
