trace Struct Reference

#include <global.h>

Data Fields
uint4	length
uint4	queryStart
uint4	subjectStart
unsigned char *	traceCodes

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Detailed Description

Definition at line 71 of file global.h.

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Field Documentation

uint4 trace::length

Definition at line 73 of file global.h.

Referenced by fasterGappedExtension_joinTraces(), fasterGappedExtension_prune(), fasterGappedExtension_traceAfterSeed(), fasterGappedExtension_traceBeforeSeed(), gappedExtension_joinTraces(), gappedExtension_prune(), gappedExtension_traceAfterSeed(), gappedExtension_traceBeforeSeed(), print_constructAlignment(), print_gappedExtension(), print_tabularGappedExtension(), print_XMLgappedExtension(), and smithWatermanTraceback_trace().

uint4 trace::queryStart

Definition at line 74 of file global.h.

Referenced by alignments_pruneOverlappingExtensions(), fasterGappedExtension_build(), fasterGappedExtension_joinTraces(), fasterGappedExtension_prune(), fasterGappedExtension_traceAfterSeed(), fasterGappedExtension_traceBeforeSeed(), gappedExtension_build(), gappedExtension_joinTraces(), gappedExtension_prune(), gappedExtension_traceAfterSeed(), gappedExtension_traceBeforeSeed(), print_constructAlignment(), print_gappedExtension(), print_tabularGappedExtension(), print_XMLgappedExtension(), smithWatermanTraceback_build(), and smithWatermanTraceback_trace().

uint4 trace::subjectStart

Definition at line 75 of file global.h.

Referenced by alignments_pruneOverlappingExtensions(), fasterGappedExtension_build(), fasterGappedExtension_joinTraces(), fasterGappedExtension_prune(), fasterGappedExtension_traceAfterSeed(), fasterGappedExtension_traceBeforeSeed(), gappedExtension_build(), gappedExtension_joinTraces(), gappedExtension_prune(), gappedExtension_traceAfterSeed(), gappedExtension_traceBeforeSeed(), print_constructAlignment(), print_gappedExtension(), print_tabularGappedExtension(), print_XMLgappedExtension(), smithWatermanTraceback_build(), and smithWatermanTraceback_trace().

unsigned char* trace::traceCodes

Definition at line 76 of file global.h.

Referenced by alignment_freeAlignment(), alignments_getTracebacks(), alignments_removeGappedExtension(), fasterGappedExtension_build(), fasterGappedExtension_joinTraces(), fasterGappedExtension_prune(), fasterGappedExtension_traceAfterSeed(), fasterGappedExtension_traceBeforeSeed(), gappedExtension_build(), gappedExtension_joinTraces(), gappedExtension_prune(), gappedExtension_traceAfterSeed(), gappedExtension_traceBeforeSeed(), print_constructAlignment(), and smithWatermanTraceback_trace().

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The documentation for this struct was generated from the following file:

• include/global.h

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