sequence Struct Reference

Collaboration diagram for sequence:

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Data Fields
uint4	number
uint4	length
unsigned char *	sequence
parent *	parent
uint4	regionStart
uint4	descriptionLength
uint4	descriptionLocation
char *	description
unsigned char *	sequence
parent *	parent
char *	description

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Detailed Description

Definition at line 40 of file cluster.c.

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Field Documentation

uint4 sequence::number

Definition at line 42 of file cluster.c.

Referenced by cluster_calculateSavings(), cluster_printCluster(), main(), rsdb_calculateSavings(), and rsdb_printCluster().

uint4 sequence::length

Definition at line 43 of file cluster.c.

Referenced by cluster_addChild(), cluster_buildCluster(), cluster_buildPSSM(), cluster_calculateSavings(), cluster_compareSequenceLengths(), cluster_getEdits(), cluster_newParent(), cluster_overlap(), cluster_printCluster(), cluster_score(), cluster_simpleClusterSequences(), cluster_spexClusterSequences(), cluster_writeClusters(), main(), rsdb_addChild(), rsdb_calculateSavings(), rsdb_compareSequenceLengths(), rsdb_newParent(), rsdb_printCluster(), rsdb_score(), rsdb_slottedSpex(), rsdb_spexClusterSequences(), rsdb_winnowingSpex(), and rsdb_writeClusters().

unsigned char* sequence::sequence

Definition at line 44 of file cluster.c.

Referenced by cluster_addChild(), cluster_buildCluster(), cluster_buildPSSM(), cluster_getEdits(), cluster_newParent(), cluster_printCluster(), cluster_removeChildren(), cluster_score(), cluster_spexClusterSequences(), cluster_writeClusters(), main(), rsdb_newParent(), rsdb_printCluster(), rsdb_score(), rsdb_slottedSpex(), rsdb_spexClusterSequences(), rsdb_winnowingSpex(), and rsdb_writeClusters().

struct parent* sequence::parent [read]

Definition at line 45 of file cluster.c.

Referenced by cluster_addChild(), cluster_calculateSavings(), cluster_getWildcode(), cluster_newParent(), cluster_printCluster(), cluster_processSequenceMatches(), cluster_removeChildren(), cluster_score(), cluster_updateWildcode(), cluster_updateWildcodes(), main(), rsdb_addChild(), rsdb_calculateSavings(), rsdb_newParent(), rsdb_printCluster(), rsdb_spexClusterSequences(), and rsdb_writeClusters().

uint4 sequence::regionStart

Definition at line 46 of file cluster.c.

Referenced by cluster_addChild(), cluster_buildCluster(), cluster_getEdits(), cluster_mergeParents(), cluster_newParent(), cluster_printCluster(), cluster_processSequenceMatches(), cluster_score(), cluster_writeClusters(), rsdb_addChild(), rsdb_newParent(), rsdb_printCluster(), and rsdb_spexClusterSequences().

uint4 sequence::descriptionLength

Definition at line 47 of file cluster.c.

Referenced by cluster_writeClusters(), main(), and rsdb_writeClusters().

uint4 sequence::descriptionLocation

Definition at line 48 of file cluster.c.

Referenced by cluster_writeClusters(), main(), rsdb_compareDescriptionLocations(), and rsdb_writeClusters().

char* sequence::description

Definition at line 49 of file cluster.c.

unsigned char* sequence::sequence

Definition at line 60 of file rsdb.c.

struct parent* sequence::parent [read]

Definition at line 61 of file rsdb.c.

char* sequence::description

Definition at line 65 of file rsdb.c.

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The documentation for this struct was generated from the following files:

• src/cluster.c
• src/rsdb.c

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