parent Struct Reference

Collaboration diagram for parent:

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Data Fields
uint4	number
unsigned char *	sequence
uint4	length
uint4	numChildren
sequence **	children
wildCode *	wildCodes
uint4	numWildcards
unsigned char *	sequence
sequence **	children

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Detailed Description

Definition at line 52 of file cluster.c.

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Field Documentation

uint4 parent::number

Definition at line 54 of file cluster.c.

Referenced by cluster_getWildcode(), cluster_newParent(), cluster_printCluster(), rsdb_newParent(), and rsdb_printCluster().

unsigned char* parent::sequence

Definition at line 55 of file cluster.c.

Referenced by cluster_addChild(), cluster_buildCluster(), cluster_calculateSavings(), cluster_getEdits(), cluster_mergeParents(), cluster_newParent(), cluster_printCluster(), cluster_score(), cluster_writeClusters(), rsdb_newParent(), rsdb_printCluster(), and rsdb_writeClusters().

uint4 parent::length

Definition at line 56 of file cluster.c.

Referenced by cluster_addChild(), cluster_calculateSavings(), cluster_mergeParents(), cluster_newParent(), cluster_printCluster(), cluster_score(), cluster_writeClusters(), rsdb_addChild(), rsdb_calculateSavings(), rsdb_newParent(), and rsdb_printCluster().

uint4 parent::numChildren

Definition at line 57 of file cluster.c.

Referenced by cluster_addChild(), cluster_calculateSavings(), cluster_mergeParents(), cluster_newParent(), cluster_printCluster(), cluster_writeClusters(), rsdb_addChild(), rsdb_calculateSavings(), rsdb_newParent(), rsdb_printCluster(), and rsdb_writeClusters().

struct sequence** parent::children [read]

Definition at line 58 of file cluster.c.

Referenced by cluster_addChild(), cluster_calculateSavings(), cluster_mergeParents(), cluster_newParent(), cluster_printCluster(), cluster_writeClusters(), rsdb_addChild(), rsdb_calculateSavings(), rsdb_newParent(), rsdb_printCluster(), rsdb_spexClusterSequences(), and rsdb_writeClusters().

struct wildCode* parent::wildCodes [read]

Definition at line 59 of file cluster.c.

Referenced by cluster_getWildcode(), cluster_mergeParents(), cluster_newParent(), cluster_updateWildcode(), cluster_updateWildcodes(), and cluster_writeClusters().

uint4 parent::numWildcards

Definition at line 60 of file cluster.c.

Referenced by cluster_mergeParents(), cluster_newParent(), and cluster_updateWildcode().

unsigned char* parent::sequence

Definition at line 71 of file rsdb.c.

struct sequence** parent::children [read]

Definition at line 74 of file rsdb.c.

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The documentation for this struct was generated from the following files:

• src/cluster.c
• src/rsdb.c

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