memSingleBlock Struct Reference

#include <memSingleBlock.h>

Data Fields
int4	blockSize
size_t	entrySize
int4	numEntries
void *	block
int4	currentEntry

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Detailed Description

Definition at line 4 of file memSingleBlock.h.

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Field Documentation

int4 memSingleBlock::blockSize

Definition at line 6 of file memSingleBlock.h.

Referenced by memSingleBlock_initializeExisting(), and memSingleBlock_newEntry().

size_t memSingleBlock::entrySize

Definition at line 7 of file memSingleBlock.h.

Referenced by memSingleBlock_getCurrent(), memSingleBlock_getEntry(), memSingleBlock_getLastEntry(), memSingleBlock_initializeExisting(), and memSingleBlock_newEntry().

int4 memSingleBlock::numEntries

Definition at line 8 of file memSingleBlock.h.

Referenced by alignments_findFinalAlignments(), alignments_getFinalAlignmentDescriptions(), alignments_getTracebacks(), alignments_isFinalAlignment(), alignments_loadSubjectsIntoMemory(), alignments_moveGoodToFinal(), alignments_sortFinalAlignments(), alignments_sortGoodAlignments(), blast_search(), cluster_clusterSequences(), cluster_processSequenceMatches(), cluster_spexClusterSequences(), encoding_replaceWildcards(), main(), memSingleBlock_getCurrent(), memSingleBlock_getLastEntry(), memSingleBlock_initializeExisting(), memSingleBlock_newEntry(), qPosList_compareList(), qPosList_print(), qPosList_processList(), rsdb_spexClusterSequences(), wordLookupDFA_build(), and wordLookupDFA_calcFrequencyGroups().

void* memSingleBlock::block

Definition at line 9 of file memSingleBlock.h.

Referenced by alignments_getFinalAlignmentDescriptions(), alignments_sortFinalAlignments(), alignments_sortGoodAlignments(), cluster_processSequenceMatches(), cluster_spexClusterSequences(), memSingleBlock_free(), memSingleBlock_getCurrent(), memSingleBlock_getEntry(), memSingleBlock_getLastEntry(), memSingleBlock_initializeExisting(), memSingleBlock_newEntry(), qPosList_free(), qPosList_print(), wordLookupDFA_build(), and wordLookupDFA_calcFrequencyGroups().

int4 memSingleBlock::currentEntry

Definition at line 10 of file memSingleBlock.h.

Referenced by memSingleBlock_getCurrent(), memSingleBlock_resetCurrent(), and qPosList_processList().

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The documentation for this struct was generated from the following file:

• include/memSingleBlock.h

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