gappedExtension Struct Reference

#include <global.h>

Collaboration diagram for gappedExtension:

[legend]

Data Fields
trace	trace
int4	nominalScore
int4	queryEnd
int4	subjectEnd
float	normalizedScore
double	eValue
gappedExtension *	next

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Detailed Description

Definition at line 80 of file global.h.

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Field Documentation

struct trace gappedExtension::trace [read]

Definition at line 82 of file global.h.

Referenced by alignment_freeAlignment(), alignments_getTracebacks(), alignments_pruneOverlappingExtensions(), alignments_removeGappedExtension(), fasterGappedExtension_build(), fasterGappedExtension_prune(), gappedExtension_build(), gappedExtension_prune(), print_gappedExtension(), print_tabularGappedExtension(), print_XMLgappedExtension(), and smithWatermanTraceback_build().

int4 gappedExtension::nominalScore

Definition at line 83 of file global.h.

Referenced by alignments_addGappedExtension(), alignments_getTracebacks(), alignments_pruneOverlappingExtensions(), fasterGappedExtension_score(), gappedExtension_score(), print_gappedExtension(), print_XMLgappedExtension(), search_nucleotideSsearch(), and search_proteinSsearch().

int4 gappedExtension::queryEnd

Definition at line 84 of file global.h.

Referenced by alignments_pruneOverlappingExtensions(), print_gappedExtension(), print_tabularGappedExtension(), print_XMLgappedExtension(), and search_nucleotideSsearch().

int4 gappedExtension::subjectEnd

Definition at line 85 of file global.h.

Referenced by alignments_pruneOverlappingExtensions(), print_gappedAlignmentsFull(), print_gappedExtension(), print_tabularGappedExtension(), print_XMLgappedExtension(), and search_nucleotideSsearch().

float gappedExtension::normalizedScore

Definition at line 86 of file global.h.

Referenced by fasterGappedExtension_score(), gappedExtension_score(), print_gappedAlignmentsBrief(), print_gappedExtension(), print_tabularGappedExtension(), and print_XMLgappedExtension().

double gappedExtension::eValue

Definition at line 87 of file global.h.

Referenced by fasterGappedExtension_score(), gappedExtension_score(), print_gappedAlignmentsBrief(), print_gappedExtension(), print_tabularGappedExtension(), and print_XMLgappedExtension().

struct gappedExtension* gappedExtension::next [read]

Definition at line 88 of file global.h.

Referenced by alignment_freeAlignment(), alignments_addGappedExtension(), alignments_pruneOverlappingExtensions(), and alignments_removeGappedExtension().

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The documentation for this struct was generated from the following file:

• include/global.h

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