finalAlignment Struct Reference

#include <global.h>

Collaboration diagram for finalAlignment:

[legend]

Data Fields
int4	highestNominalScore
char *	description
alignment *	alignment

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Detailed Description

Definition at line 110 of file global.h.

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Field Documentation

int4 finalAlignment::highestNominalScore

Definition at line 112 of file global.h.

Referenced by alignments_addFinalAlignment(), alignments_addGoodAlignment(), alignments_compareFinalAlignments(), alignments_findFinalAlignments(), alignments_findTopFinalAlignments(), alignments_getTracebacks(), alignments_isFinalAlignment(), alignments_loadSubjectsIntoMemory(), alignments_printFinalAlignments(), alignments_printGoodAlignments(), and print_gappedAlignmentsBrief().

char* finalAlignment::description

Definition at line 113 of file global.h.

Referenced by alignments_addFinalAlignment(), alignments_free(), print_gappedAlignmentsBrief(), and print_gappedAlignmentsFull().

struct alignment* finalAlignment::alignment [read]

Definition at line 114 of file global.h.

Referenced by alignments_addFinalAlignment(), alignments_addGoodAlignment(), alignments_compareAlignmentDescriptionLocations(), alignments_compareFinalAlignments(), alignments_findFinalAlignments(), alignments_findTopFinalAlignments(), alignments_free(), alignments_getTracebacks(), alignments_isFinalAlignment(), alignments_loadSubjectsIntoMemory(), alignments_printFinalAlignments(), alignments_printGoodAlignments(), print_gappedAlignmentsBrief(), and print_gappedAlignmentsFull().

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The documentation for this struct was generated from the following file:

• include/global.h

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