dpResults Struct Reference

#include <global.h>

Collaboration diagram for dpResults:

[legend]

Data Fields
coordinate	best
uint4	bestScore
unsigned char **	traceback

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Detailed Description

Definition at line 63 of file global.h.

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Field Documentation

struct coordinate dpResults::best [read]

Definition at line 65 of file global.h.

Referenced by bytepackGappedScoring_dpAfterSeed(), bytepackGappedScoring_dpBeforeSeed(), bytepackGappedScoring_score(), fasterBytepackGappedScoring_dpAfterSeed(), fasterBytepackGappedScoring_dpBeforeSeed(), fasterGappedExtension_build(), fasterGappedExtension_dpAfterSeed(), fasterGappedExtension_dpBeforeSeed(), fasterGappedExtension_printAfterRow(), fasterGappedExtension_printBeforeRow(), gappedExtension_build(), gappedExtension_dpAfterSeed(), gappedExtension_dpBeforeSeed(), gappedExtension_printAfterRow(), gappedExtension_printBeforeRow(), gappedScoring_dpAfterSeed(), gappedScoring_dpBeforeSeed(), gappedScoring_score(), nuGappedScoring_dpAfterSeed(), nuGappedScoring_dpBeforeSeed(), nuGappedScoring_printAfterRow(), nuGappedScoring_printBeforeRow(), nuGappedScoring_score(), oldGappedScoring_dpAfterSeed(), oldGappedScoring_dpBeforeSeed(), oldGappedScoring_score(), oldSemiGappedScoring_dpAfterSeed(), oldSemiGappedScoring_dpBeforeSeed(), oldSemiGappedScoring_score(), search_nucleotideSsearch(), search_proteinSsearch(), semiGappedScoring_dpAfterSeed(), semiGappedScoring_dpBeforeSeed(), semiGappedScoring_score(), smithWatermanScoring_dynamicProgramming(), smithWatermanScoring_scoreReverse(), smithWatermanTraceback_build(), smithWatermanTraceback_dynamicProgramming(), tableGappedScoring_dpAfterSeed(), tableGappedScoring_dpBeforeSeed(), and tableGappedScoring_score().

uint4 dpResults::bestScore

Definition at line 66 of file global.h.

Referenced by bytepackGappedScoring_dpAfterSeed(), bytepackGappedScoring_dpBeforeSeed(), bytepackGappedScoring_score(), fasterBytepackGappedScoring_dpAfterSeed(), fasterBytepackGappedScoring_dpBeforeSeed(), fasterGappedExtension_build(), fasterGappedExtension_dpAfterSeed(), fasterGappedExtension_dpBeforeSeed(), gappedExtension_build(), gappedExtension_dpAfterSeed(), gappedExtension_dpBeforeSeed(), gappedScoring_dpAfterSeed(), gappedScoring_dpBeforeSeed(), gappedScoring_score(), nuGappedScoring_dpAfterSeed(), nuGappedScoring_dpBeforeSeed(), nuGappedScoring_score(), oldGappedScoring_dpAfterSeed(), oldGappedScoring_dpBeforeSeed(), oldGappedScoring_score(), oldSemiGappedScoring_dpAfterSeed(), oldSemiGappedScoring_dpBeforeSeed(), oldSemiGappedScoring_score(), search_nucleotideSsearch(), search_proteinSsearch(), semiGappedScoring_dpAfterSeed(), semiGappedScoring_dpBeforeSeed(), semiGappedScoring_score(), smithWatermanScoring_dynamicProgramming(), smithWatermanScoring_score(), smithWatermanTraceback_build(), smithWatermanTraceback_dynamicProgramming(), tableGappedScoring_dpAfterSeed(), tableGappedScoring_dpBeforeSeed(), and tableGappedScoring_score().

unsigned char** dpResults::traceback

Definition at line 67 of file global.h.

Referenced by bytepackGappedScoring_dpAfterSeed(), bytepackGappedScoring_dpBeforeSeed(), fasterBytepackGappedScoring_dpAfterSeed(), fasterBytepackGappedScoring_dpBeforeSeed(), fasterGappedExtension_dpAfterSeed(), fasterGappedExtension_dpBeforeSeed(), gappedExtension_dpAfterSeed(), gappedExtension_dpBeforeSeed(), gappedScoring_dpAfterSeed(), gappedScoring_dpBeforeSeed(), nuGappedScoring_dpAfterSeed(), nuGappedScoring_dpBeforeSeed(), oldGappedScoring_dpAfterSeed(), oldGappedScoring_dpBeforeSeed(), oldSemiGappedScoring_dpAfterSeed(), oldSemiGappedScoring_dpBeforeSeed(), semiGappedScoring_dpAfterSeed(), semiGappedScoring_dpBeforeSeed(), smithWatermanScoring_dynamicProgramming(), smithWatermanTraceback_dynamicProgramming(), tableGappedScoring_dpAfterSeed(), and tableGappedScoring_dpBeforeSeed().

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The documentation for this struct was generated from the following file:

• include/global.h

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