coordinate Struct Reference

#include <global.h>

Data Fields
int4	queryOffset
int4	subjectOffset

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Detailed Description

Definition at line 35 of file global.h.

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Field Documentation

int4 coordinate::queryOffset

Definition at line 37 of file global.h.

Referenced by alignments_checkForJoin(), alignments_contains(), alignments_pruneRegion(), bytepackGappedScoring_dpAfterSeed(), bytepackGappedScoring_dpBeforeSeed(), bytepackGappedScoring_score(), fasterBytepackGappedScoring_dpAfterSeed(), fasterBytepackGappedScoring_dpBeforeSeed(), fasterGappedExtension_build(), fasterGappedExtension_dpAfterSeed(), fasterGappedExtension_dpBeforeSeed(), fasterGappedExtension_prune(), gappedExtension_build(), gappedExtension_dpAfterSeed(), gappedExtension_dpBeforeSeed(), gappedExtension_prune(), gappedScoring_dpAfterSeed(), gappedScoring_dpBeforeSeed(), gappedScoring_score(), nuGappedScoring_dpAfterSeed(), nuGappedScoring_dpBeforeSeed(), nuGappedScoring_score(), oldGappedScoring_dpAfterSeed(), oldGappedScoring_dpBeforeSeed(), oldGappedScoring_score(), oldSemiGappedScoring_dpAfterSeed(), oldSemiGappedScoring_dpBeforeSeed(), oldSemiGappedScoring_score(), search_nucleotideSsearch(), semiGappedScoring_dpAfterSeed(), semiGappedScoring_dpBeforeSeed(), semiGappedScoring_score(), smithWatermanScoring_dynamicProgramming(), smithWatermanScoring_scoreReverse(), smithWatermanTraceback_build(), smithWatermanTraceback_dynamicProgramming(), tableGappedScoring_dpAfterSeed(), tableGappedScoring_dpBeforeSeed(), tableGappedScoring_score(), ungappedExtension_extend(), ungappedExtension_findNucleotideSeed(), ungappedExtension_findProteinSeed(), ungappedExtension_findSeed(), ungappedExtension_nucleotideExtend(), ungappedExtension_oneHitExtend(), ungappedExtension_print(), and unpack_getRegions().

int4 coordinate::subjectOffset

Definition at line 38 of file global.h.

Referenced by alignments_checkForJoin(), alignments_contains(), alignments_getTracebacks(), alignments_pruneRegion(), alignments_selectRegion(), bytepackGappedScoring_dpAfterSeed(), bytepackGappedScoring_dpBeforeSeed(), bytepackGappedScoring_score(), fasterBytepackGappedScoring_dpAfterSeed(), fasterBytepackGappedScoring_dpBeforeSeed(), fasterGappedExtension_build(), fasterGappedExtension_dpAfterSeed(), fasterGappedExtension_dpBeforeSeed(), fasterGappedExtension_prune(), gappedExtension_build(), gappedExtension_dpAfterSeed(), gappedExtension_dpBeforeSeed(), gappedExtension_prune(), gappedScoring_dpAfterSeed(), gappedScoring_dpBeforeSeed(), gappedScoring_score(), nuGappedScoring_dpAfterSeed(), nuGappedScoring_dpBeforeSeed(), nuGappedScoring_score(), oldGappedScoring_dpAfterSeed(), oldGappedScoring_dpBeforeSeed(), oldGappedScoring_score(), oldSemiGappedScoring_dpAfterSeed(), oldSemiGappedScoring_dpBeforeSeed(), oldSemiGappedScoring_score(), search_nucleotideSsearch(), semiGappedScoring_dpAfterSeed(), semiGappedScoring_dpBeforeSeed(), semiGappedScoring_score(), smithWatermanScoring_dynamicProgramming(), smithWatermanScoring_scoreReverse(), smithWatermanTraceback_build(), smithWatermanTraceback_dynamicProgramming(), tableGappedScoring_dpAfterSeed(), tableGappedScoring_dpBeforeSeed(), tableGappedScoring_score(), ungappedExtension_extend(), ungappedExtension_findNucleotideSeed(), ungappedExtension_findProteinSeed(), ungappedExtension_findSeed(), ungappedExtension_nucleotideExtend(), ungappedExtension_oneHitExtend(), ungappedExtension_print(), and unpack_getRegions().

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The documentation for this struct was generated from the following file:

• include/global.h

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