Sequence Struct Reference

#include <genwin.h>

Collaboration diagram for Sequence:

[legend]

Data Fields
Database *	db
char *	id
char *	name
char *	organism
char *	header
char *	seq
int	start
int	length
Alphabet *	alphabet
Sequence *	parent
Sequence *	root
Sequence **	children
Bool	bogus
Bool	punctuation
Bool	rubberwin
Bool	floatwin
Bool	seedwin
int *	state
double	entropy
int *	composition
Bool *	comptst
int *	compindex
char *	classvec
Alphabet *	clalphabet
double *	scorevec
double	score
PerScoreVec *	foo
int *	bar

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Detailed Description

Definition at line 32 of file genwin.h.

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Field Documentation

struct Database* Sequence::db [read]

Definition at line 34 of file genwin.h.

char* Sequence::id

Definition at line 36 of file genwin.h.

Referenced by openwin().

char* Sequence::name

Definition at line 37 of file genwin.h.

Referenced by openwin().

char* Sequence::organism

Definition at line 38 of file genwin.h.

Referenced by openwin().

char* Sequence::header

Definition at line 39 of file genwin.h.

Referenced by openwin().

char* Sequence::seq

Definition at line 41 of file genwin.h.

Referenced by compon(), hasdash(), openwin(), pretreereport(), readentry(), and seg_segSequence().

int Sequence::start

Definition at line 42 of file genwin.h.

Referenced by openwin().

int Sequence::length

Definition at line 43 of file genwin.h.

Referenced by openwin(), pretreereport(), and shiftwin1().

struct Alphabet* Sequence::alphabet [read]

Definition at line 44 of file genwin.h.

struct Sequence* Sequence::parent [read]

Definition at line 46 of file genwin.h.

Referenced by openwin().

struct Sequence* Sequence::root [read]

Definition at line 47 of file genwin.h.

Referenced by openwin().

struct Sequence** Sequence::children [read]

Definition at line 48 of file genwin.h.

Referenced by openwin().

Bool Sequence::bogus

Definition at line 50 of file genwin.h.

Bool Sequence::punctuation

Definition at line 51 of file genwin.h.

Referenced by openwin().

Bool Sequence::rubberwin

Definition at line 52 of file genwin.h.

Referenced by openwin().

Bool Sequence::floatwin

Definition at line 53 of file genwin.h.

Referenced by openwin().

Bool Sequence::seedwin

Definition at line 54 of file genwin.h.

int* Sequence::state

Definition at line 56 of file genwin.h.

Referenced by openwin(), and trim().

double Sequence::entropy

Definition at line 57 of file genwin.h.

Referenced by openwin(), and seqent().

int* Sequence::composition

Definition at line 58 of file genwin.h.

Referenced by openwin().

Bool* Sequence::comptst

Definition at line 59 of file genwin.h.

int* Sequence::compindex

Definition at line 60 of file genwin.h.

char* Sequence::classvec

Definition at line 62 of file genwin.h.

Referenced by openwin().

struct Alphabet* Sequence::clalphabet [read]

Definition at line 63 of file genwin.h.

double* Sequence::scorevec

Definition at line 64 of file genwin.h.

Referenced by openwin().

double Sequence::score

Definition at line 65 of file genwin.h.

struct PerScoreVec* Sequence::foo [read]

Definition at line 67 of file genwin.h.

int* Sequence::bar

Definition at line 68 of file genwin.h.

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The documentation for this struct was generated from the following file:

• src/genwin.h

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