include/seg.h File Reference

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Functions
void	seg_segSequence (char *sequence)

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Function Documentation

void seg_segSequence

(

char *

sequence

)

Definition at line 47 of file seg.c.

References downset, entropy_init(), FALSE, freesegs(), genwininit(), hionly, loonly, mergesegs(), prettyseq, prettytree, segseq(), Sequence::seq, singleseq, singreport(), TRUE, upset, and window.

Referenced by main().

{
    struct Sequence *seq;
    struct Segment *segs;

   seq = (struct Sequence *) malloc(sizeof(struct Sequence));
    seq->seq = sequence;
    seq->length = strlen(sequence);
   seq->db = NULL;
   seq->parent = (struct Sequence *) NULL;
   seq->root = (struct Sequence *) NULL;
   seq->children = (struct Sequence **) NULL;
   seq->rubberwin = FALSE;
   seq->floatwin = FALSE;

   seq->punctuation = FALSE;
   seq->entropy = -2.;
   seq->state = (int *) NULL;
   seq->composition = (int *) NULL;
   seq->classvec = (char *) NULL;
   seq->scorevec = (double *) NULL;

   genwininit();

   downset = (window+1)/2 - 1;
   upset = window - downset;

    singleseq = TRUE;
    prettyseq = FALSE;
    prettytree = FALSE;
    hionly = TRUE;
    loonly = FALSE;

   entropy_init(window);

    segs = (struct Segment *) NULL;
    segseq(seq, &segs, 0);
    mergesegs(seq, segs);

    singreport(seq, segs);

    freesegs(segs);
}

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