Here is a list of all functions, variables, defines, enums, and typedefs with links to the files they belong to:
- aachar
: genwin.c
, genwin.h
- aaflag
: genwin.c
- aaindex
: genwin.c
, genwin.h
- abets
: genwin.c
- ABS
: karlin.c
- alignment_freeAlignment()
: alignments.c
- alignment_unpackSubject()
: alignments.h
- alignments_addFinalAlignment()
: alignments.h
, alignments.c
- alignments_addGappedExtension()
: alignments.h
, alignments.c
- alignments_addGoodAlignment()
: alignments.c
- alignments_addUngappedExtension()
: alignments.c
, alignments.h
- alignments_addUngappedExtensionAtEnd()
: alignments.c
- alignments_alignments
: alignments.h
- alignments_checkForJoin()
: alignments.c
- alignments_compareAlignmentDescriptionLocations()
: alignments.c
- alignments_compareCodeword()
: index.c
- alignments_compareFinalAlignments()
: alignments.c
- alignments_compareQueryPosition()
: index.c
- alignments_contains()
: alignments.c
- alignments_createNew()
: alignments.c
, alignments.h
- alignments_currentAlignment
: alignments.h
- alignments_expandCluster()
: alignments.c
- alignments_finalAlignments
: alignments.h
- alignments_finalAlignmentsSorted
: alignments.c
- alignments_findFinalAlignments()
: alignments.h
, alignments.c
- alignments_findGoodAlignments()
: alignments.c
, alignments.h
- alignments_findTopFinalAlignments()
: alignments.c
- alignments_free()
: alignments.h
, alignments.c
- alignments_getFinalAlignmentDescriptions()
: alignments.c
, alignments.h
- alignments_getTracebacks()
: alignments.c
, alignments.h
- alignments_goodAlignments
: alignments.h
- alignments_initialize()
: alignments.c
, alignments.h
- alignments_isFinalAlignment()
: alignments.h
, alignments.c
- alignments_loadSubjectsIntoMemory()
: alignments.c
, alignments.h
- alignments_moveGoodToFinal()
: alignments.c
- alignments_numClusters
: alignments.c
, alignments.h
- alignments_numVolumes
: alignments.c
- alignments_performScoring()
: alignments.h
- alignments_printFinalAlignments()
: alignments.c
- alignments_printGoodAlignments()
: alignments.c
- alignments_pruneOverlappingExtensions()
: alignments.c
- alignments_pruneRegion()
: alignments.c
- alignments_regularGappedAlignment()
: alignments.c
- alignments_removeGappedExtension()
: alignments.c
- alignments_selectRegion()
: alignments.c
- alignments_sortFinalAlignments()
: alignments.c
, alignments.h
- alignments_sortGoodAlignments()
: alignments.c
- alignments_unpruneRegion()
: alignments.c
- alignments_volumeAlignments
: alignments.c
- appendseg()
: seg.c
Generated on Wed Dec 19 21:03:02 2007 for fsa-blast by
1.5.2