fsa-blast File List

Here is a list of all files with brief descriptions:

include/_vec.h [code]
include/alignments.h [code]
include/blast.h [code]
include/bytepackGappedScoring.h [code]
include/constants.h [code]
include/descriptions.h [code]
include/dust.h [code]
include/encoding.h [code]
include/fasterBytepackGappedScoring.h [code]
include/fasterGappedExtension.h [code]
include/gappedExtension.h [code]
include/gappedScoring.h [code]
include/global.h [code]
include/hashcounter.h [code]
include/hitMatrix.h [code]
include/index.h [code]
include/karlin.h [code]
include/memBlocks.h [code]
include/memSingleBlock.h [code]
include/nucleotideLookup.h [code]
include/nuGappedScoring.h [code]
include/oldGappedScoring.h [code]
include/oldSemiGappedScoring.h [code]
include/parameters.h [code]
include/postings.h [code]
include/print.h [code]
include/PSSMatrix.h [code]
include/qPosList.h [code]
include/readdb.h [code]
include/readFasta.h [code]
include/readFile.h [code]
include/readindex.h [code]
include/readNcbidb.h [code]
include/scoreMatrix.h [code]
include/search.h [code]
include/seg.h [code]
include/semiGappedScoring.h [code]
include/smithWatermanScoring.h [code]
include/smithWatermanTraceback.h [code]
include/statistics.h [code]
include/tableGappedScoring.h [code]
include/ungappedExtension.h [code]
include/unpack.h [code]
include/utils.h [code]
include/vbyte.h [code]
include/vbyte2.h [code]
include/vec.h [code]
include/wildcards.h [code]
include/wordLookupDFA.h [code]
include/writedb.h [code]
include/writeFile.h [code]
src/alignments.c [code]
src/blast.c [code]
src/bytepackGappedScoring.c [code]
src/chooseWilds.c [code]
src/cluster.c [code]
src/constants.c [code]
src/createindex.c [code]
src/descriptions.c [code]
src/dust.c [code]
src/dustApp.c [code]
src/encoding.c [code]
src/fasterBytepackGappedScoring.c [code]
src/fasterGappedExtension.c [code]
src/formatdb.c [code]
src/gappedExtension.c [code]
src/gappedScoring.c [code]
src/genwin.c [code]
src/genwin.h [code]
src/global.c [code]
src/hashcounter.c [code]
src/hitMatrix.c [code]
src/identityAlign.c [code]
src/index.c [code]
src/karlin.c [code]
src/lnfac.h [code]
src/memBlocks.c [code]
src/memSingleBlock.c [code]
src/nucleotideLookup.c [code]
src/nuGappedScoring.c [code]
src/oldGappedScoring.c [code]
src/oldSemiGappedScoring.c [code]
src/parameters.c [code]
src/postings.c [code]
src/print.c [code]
src/printDescription.c [code]
src/PSSMatrix.c [code]
src/qPosList.c [code]
src/readdb.c [code]
src/readdbApp.c [code]
src/readFasta.c [code]
src/readFile.c [code]
src/readindex.c [code]
src/readNcbidb.c [code]
src/rsdb.c [code]
src/scoreMatrix.c [code]
src/search.c [code]
src/seg.c [code]
src/semiGappedScoring.c [code]
src/smithWatermanScoring.c [code]
src/smithWatermanTraceback.c [code]
src/statistics.c [code]
src/tableGappedScoring.c [code]
src/ungappedExtension.c [code]
src/unpack.c [code]
src/vbyte.c [code]
src/vbyte2.c [code]
src/vec.c [code]
src/wildcards.c [code]
src/wordLookupDFA.c [code]
src/writedb.c [code]
src/writeFile.c [code]

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