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Defines | |
| #define | constants_minSignedInt -2147483647 |
| #define | constants_maxSignedInt 2147483647 |
| #define | constants_max_int2 32767 |
| #define | constants_gappedExtensionDummyValue -666 |
| #define | constants_sentinalScore -9999 |
| #define | constants_initialAllocUngappedExtensions 10000 |
| #define | constants_initialAllocAlignments 5000 |
| #define | constants_initialAllocGoodAlignments 1000 |
| #define | constants_initialAllocFinalAlignments 500 |
| #define | constants_initialAllocCodewordQueryPositions 5 |
| #define | constants_initialTracebackAlloc 10000 |
| #define | constants_volumeMaxSize 2000000000 |
| #define | constants_maxNumVolumes 100 |
| #define | constants_maximumTracebackSize 10000000 |
| #define | constants_unpackRegionExtend 1000 |
| #define | constants_initialAllocUnpackRegions 10000 |
| #define | constants_databaseVersion 3 |
| #define | constants_initialSequenceData 100000 |
Variables | |
| float | Robinson_prob [] |
| float | Nucleotide_prob [] |
| #define constants_databaseVersion 3 |
| #define constants_gappedExtensionDummyValue -666 |
Definition at line 7 of file constants.h.
Referenced by bytepackGappedScoring_dpAfterSeed(), bytepackGappedScoring_dpBeforeSeed(), fasterBytepackGappedScoring_dpAfterSeed(), fasterBytepackGappedScoring_dpBeforeSeed(), fasterGappedExtension_dpAfterSeed(), fasterGappedExtension_dpBeforeSeed(), gappedExtension_dpAfterSeed(), gappedExtension_dpBeforeSeed(), gappedScoring_dpAfterSeed(), gappedScoring_dpBeforeSeed(), nuGappedScoring_dpAfterSeed(), nuGappedScoring_dpBeforeSeed(), oldGappedScoring_dpAfterSeed(), oldGappedScoring_dpBeforeSeed(), oldSemiGappedScoring_dpAfterSeed(), oldSemiGappedScoring_dpBeforeSeed(), semiGappedScoring_dpAfterSeed(), and semiGappedScoring_dpBeforeSeed().
| #define constants_initialAllocAlignments 5000 |
Definition at line 10 of file constants.h.
Referenced by alignments_findGoodAlignments(), and alignments_initialize().
| #define constants_initialAllocCodewordQueryPositions 5 |
Definition at line 13 of file constants.h.
Referenced by nucleotideLookup_build(), and wordLookupDFA_build().
| #define constants_initialAllocFinalAlignments 500 |
| #define constants_initialAllocGoodAlignments 1000 |
| #define constants_initialAllocUngappedExtensions 10000 |
| #define constants_initialAllocUnpackRegions 10000 |
| #define constants_initialSequenceData 100000 |
| #define constants_initialTracebackAlloc 10000 |
| #define constants_max_int2 32767 |
Definition at line 6 of file constants.h.
Referenced by nucleotideLookup_build(), search_protein1hit(), search_protein2hit(), and wordLookupDFA_build().
| #define constants_maximumTracebackSize 10000000 |
| #define constants_maxNumVolumes 100 |
Definition at line 16 of file constants.h.
| #define constants_maxSignedInt 2147483647 |
| #define constants_minSignedInt -2147483647 |
Definition at line 4 of file constants.h.
| #define constants_sentinalScore -9999 |
Definition at line 8 of file constants.h.
Referenced by cluster_averageWildcodeScore(), PSSMatrix_print(), scoreMatrix_create(), scoreMatrix_load(), scoreMatrix_print(), and wildcards_scoreResidueWildMatch().
| #define constants_unpackRegionExtend 1000 |
Definition at line 18 of file constants.h.
Referenced by unpack_extendRegionEnd(), unpack_extendRegionStart(), and unpack_getRegions().
| #define constants_volumeMaxSize 2000000000 |
| float Nucleotide_prob[] |
Definition at line 37 of file constants.c.
Referenced by statistics_calculateUngappedKarlinParameters().
| float Robinson_prob[] |
Definition at line 8 of file constants.c.
Referenced by cluster_averageWildcodeScore(), scoreMatrix_load(), statistics_calculateUngappedKarlinParameters(), wildcards_averageResidueWildMatch(), and wordLookupDFA_calcFrequencyGroups().
1.5.2