blat

o+Data Structures

|o*ace

|o*aceAF

|o*aceAS

|o*aceCO

|o*aceRD

|o*aminoAcidTable

|o*apacheAccessLog

|o*asColumn

|o*asObject

|o*asTypeInfo

|o*axt

|o*axtBundle

|o*axtData

|o*axtRef

|o*axtScoreScheme

|o*baf

|o*bfEdge

|o*bfGraph

|o*bfRange

|o*bfVertex

|o*binElement

|o*binKeeper

|o*binKeeperCookie

|o*blastBlock

|o*blastFile

|o*blastGappedAli

|o*blastQuery

|o*block

|o*blockPos

|o*box

|o*boxClump

|o*boxIn

|o*boxRef

|o*carefulMemBlock

|o*cBlock

|o*cdaAli

|o*cdaBlock

|o*cell2L

|o*cfm

|o*cgiChoice

|o*cgiVar

|o*chain

|o*chainConnect

|o*cluster

|o*codonBias

|o*codonTable

|o*colHash

|o*colHashEl

|o*contig

|o*contigTree

|o*correlate

|o*crudeAli

|o*crudeExon

|o*crudeGene

|o*crudeHit

|o*dgConnection

|o*dgEdge

|o*dgEdgeRef

|o*dgNode

|o*dgNodeRef

|o*diGraph

|o*dlList

|o*dlNode

|o*dlSorter

|o*dnaLoad

|o*dnaLoadStack

|o*dnaMotif

|o*dnaSeq

|o*dtdAttribute

|o*dtdElChild

|o*dtdElement

|o*dyString

|o*ensAnalysis

|o*ensExon

|o*ensFeature

|o*ensGene

|o*ensTranscript

|o*errCatch

|o*exp

|o*fastProber

|o*ffAli

|o*fileInfo

|o*fof

|o*fofBatch

|o*fofPos

|o*fofRecList

|o*fofRecord

|o*font_hdr

|o*gap_scores

|o*gapCalc

|o*gdfDataPoint

|o*gdfGene

|o*geneFinder

|o*genoFind

|o*gfClump

|o*gff

|o*gffFeature

|o*gffFile

|o*gffGene

|o*gffGeneId

|o*gffGroup

|o*gffLine

|o*gffSegLine

|o*gffSegment

|o*gffSeqName

|o*gffSource

|o*gfHit

|o*gfOutput

|o*gfPcrInput

|o*gfPcrOutput

|o*gfRange

|o*gfSeqSource

|o*gfServerAt

|o*gfWebConfig

|o*gfxPoint

|o*gfxPoly

|o*gif_header

|o*gif_image

|o*hash

|o*hashCookie

|o*hashEl

|o*hgAlignment

|o*hgAliHit

|o*hgBac

|o*hgBoundedHit

|o*hgContig

|o*hgGene

|o*hgHit

|o*hgNest

|o*hgRange

|o*hgScoredHit

|o*hgTranscript

|o*histoResult

|o*hpfDomain

|o*hpfModel

|o*hpfResult

|o*htmlAttribute

|o*htmlCookie

|o*htmlForm

|o*htmlFormVar

|o*htmlPage

|o*htmlStatus

|o*htmlTable

|o*htmlTableRow

|o*htmlTag

|o*kdBranch

|o*kdLeaf

|o*kdTree

|o*keyExp

|o*keyVal

|o*kvt

|o*kxTok

|o*letterProb

|o*lineFile

|o*lm

|o*lmBlock

|o*mafAli

|o*mafComp

|o*mafFile

|o*md5_context

|o*memGfx

|o*memGif

|o*memHandler

|o*memTracker

|o*metaOutput

|o*mimeBuf

|o*mimePart

|o*mrnaAli

|o*myInt

|o*netParsedUrl

|o*nibInfo

|o*nibStream

|o*nibTwoCache

|o*nt4Seq

|o*offsetList

|o*optionSpec

|o*patClump

|o*patSpace

|o*phmmAliPair

|o*phmmMatrix

|o*phmmMommy

|o*phmmState

|o*phyloName

|o*phyloTree

|o*pipeline

|o*plProc

|o*predScore

|o*probeTile

|o*protoGene

|o*pscmGfx

|o*psGfx

|o*psl

|o*pslQuery

|o*pslTbl

|o*pslxData

|o*psPoint

|o*psPoly

|o*qaStatistics

|o*qaStatus

|o*quickHeap

|o*range

|o*rbTree

|o*rbTreeNode

|o*repeatMaskOut

|o*rgbColor

|o*rudp

|o*rudpHeader

|o*score

|o*seqHashEl

|o*shaResList

|o*shaResNode

|o*slDouble

|o*slInt

|o*slList

|o*slName

|o*slPair

|o*slRef

|o*snof

|o*spacedColumn

|o*spaceNode

|o*spaceRowTracker

|o*spaceSaver

|o*ssBundle

|o*ssEdge

|o*ssFfItem

|o*ssGraph

|o*ssNode

|o*subText

|o*synQueue

|o*tabRow

|o*targetHits

|o*tempName

|o*tokenizer

|o*trans3

|o*trix

|o*trixHitPos

|o*trixIxx

|o*trixSearchResult

|o*trixWordResult

|o*twoBit

|o*twoBitFile

|o*twoBitIndex

|o*twoBitSeqSpec

|o*twoBitSpec

|o*vGfx

|o*webServerSpecific

|o*wormCdnaInfo

|o*wormCdnaIterator

|o*wormFeature

|o*wormGdfCache

|o*xaAli

|o*xAli

|o*xap

|o*xapStack

|o*xp

|\*xpStack

o*Data Fields

o+File List

|o*blat/blat.c

|o*gfClient/gfClient.c

|o*gfServer/gfServer.c

|o*inc/ace.h

|o*inc/aliType.h

|o*inc/apacheLog.h

|o*inc/asParse.h

|o*inc/axt.h

|o*inc/bandExt.h

|o*inc/base64.h

|o*inc/binRange.h

|o*inc/bits.h

|o*inc/blastParse.h

|o*inc/boxClump.h

|o*inc/boxLump.h

|o*inc/browserGfx.h

|o*inc/cda.h

|o*inc/chain.h

|o*inc/chainBlock.h

|o*inc/chainConnect.h

|o*inc/chainToAxt.h

|o*inc/chainToPsl.h

|o*inc/cheapcgi.h

|o*inc/codebias.h

|o*inc/common.h

|o*inc/correlate.h

|o*inc/crudeali.h

|o*inc/diGraph.h

|o*inc/dlist.h

|o*inc/dnaLoad.h

|o*inc/dnaMarkov.h

|o*inc/dnaMotif.h

|o*inc/dnaseq.h

|o*inc/dnautil.h

|o*inc/dtdParse.h

|o*inc/dystring.h

|o*inc/emblParse.h

|o*inc/ens.h

|o*inc/errabort.h

|o*inc/errCatch.h

|o*inc/fa.h

|o*inc/filePath.h

|o*inc/flydna.h

|o*inc/fof.h

|o*inc/fuzzyFind.h

|o*inc/gapCalc.h

|o*inc/gdf.h

|o*inc/genoFind.h

|o*inc/gfClientLib.h

|o*inc/gff.h

|o*inc/gfPcrLib.h

|o*inc/gfWebLib.h

|o*inc/gfxPoly.h

|o*inc/gifLabel.h

|o*inc/hash.h

|o*inc/hgap.h

|o*inc/hgdb.h

|o*inc/hgGene.h

|o*inc/histogram.h

|o*inc/hmmPfamParse.h

|o*inc/hmmstats.h

|o*inc/htmlPage.h

|o*inc/htmshell.h

|o*inc/internet.h

|o*inc/jointalign.h

|o*inc/jpegSize.h

|o*inc/keys.h

|o*inc/kxTok.h

|o*inc/linefile.h

|o*inc/localmem.h

|o*inc/log.h

|o*inc/maDbRep.h

|o*inc/maf.h

|o*inc/maToFf.h

|o*inc/md5.h

|o*inc/memalloc.h

|o*inc/memgfx.h

|o*inc/mime.h

|o*inc/net.h

|o*inc/nib.h

|o*inc/nibTwo.h

|o*inc/nt4.h

|o*inc/obscure.h

|o*inc/oldGff.h

|o*inc/oligoTm.h

|o*inc/ooc.h

|o*inc/options.h

|o*inc/pairHmm.h

|o*inc/patSpace.h

|o*inc/phyloTree.h

|o*inc/pipeline.h

|o*inc/portable.h

|o*inc/pscmGfx.h

|o*inc/psGfx.h

|o*inc/psl.h

|o*inc/pslTbl.h

|o*inc/pslTransMap.h

|o*inc/psPoly.h

|o*inc/pthreadWrap.h

|o*inc/qa.h

|o*inc/quickHeap.h

|o*inc/quotedP.h

|o*inc/ra.h

|o*inc/rangeTree.h

|o*inc/rbTree.h

|o*inc/repMask.h

|o*inc/rle.h

|o*inc/rnautil.h

|o*inc/rudp.h

|o*inc/scoreWindow.h

|o*inc/seqOut.h

|o*inc/seqStats.h

|o*inc/shaRes.h

|o*inc/sig.h

|o*inc/slog.h

|o*inc/snof.h

|o*inc/snofmake.h

|o*inc/spacedColumn.h

|o*inc/spacedSeed.h

|o*inc/spaceSaver.h

|o*inc/sqlList.h

|o*inc/sqlNum.h

|o*inc/subText.h

|o*inc/supStitch.h

|o*inc/synQueue.h

|o*inc/tabRow.h

|o*inc/textOut.h

|o*inc/tokenizer.h

|o*inc/trans3.h

|o*inc/trix.h

|o*inc/twoBit.h

|o*inc/unfin.h

|o*inc/verbose.h

|o*inc/vGfx.h

|o*inc/wormdna.h

|o*inc/xa.h

|o*inc/xAli.h

|o*inc/xap.h

|o*inc/xenalign.h

|o*inc/xmlEscape.h

|o*inc/xp.h

|o*jkOwnLib/bandExt.c

|o*jkOwnLib/crudeali.c

|o*jkOwnLib/ffAliHelp.c

|o*jkOwnLib/ffSeedExtend.c

|o*jkOwnLib/fuzzyFind.c

|o*jkOwnLib/genoFind.c

|o*jkOwnLib/gfBlatLib.c

|o*jkOwnLib/gfClientLib.c

|o*jkOwnLib/gfInternal.c

|o*jkOwnLib/gfInternal.h

|o*jkOwnLib/gfOut.c

|o*jkOwnLib/gfPcrLib.c

|o*jkOwnLib/gfWebLib.c

|o*jkOwnLib/ooc.c

|o*jkOwnLib/patSpace.c

|o*jkOwnLib/supStitch.c

|o*jkOwnLib/trans3.c

|o*jkOwnLib/xenbig.c

|o*jkOwnLib/xensmall.c

|o*lib/aliType.c

|o*lib/apacheLog.c

|o*lib/asParse.c

|o*lib/axt.c

|o*lib/axtAffine.c

|o*lib/base64.c

|o*lib/binRange.c

|o*lib/bits.c

|o*lib/blastOut.c

|o*lib/blastParse.c

|o*lib/boxClump.c

|o*lib/boxLump.c

|o*lib/browserGfx.c

|o*lib/cda.c

|o*lib/chain.c

|o*lib/chainBlock.c

|o*lib/chainConnect.c

|o*lib/chainToAxt.c

|o*lib/chainToPsl.c

|o*lib/cheapcgi.c

|o*lib/codebias.c

|o*lib/colHash.c

|o*lib/colHash.h

|o*lib/common.c

|o*lib/correlate.c

|o*lib/dgRange.c

|o*lib/diGraph.c

|o*lib/dlist.c

|o*lib/dnaLoad.c

|o*lib/dnaMarkov.c

|o*lib/dnaMotif.c

|o*lib/dnaseq.c

|o*lib/dnautil.c

|o*lib/dtdParse.c

|o*lib/dystring.c

|o*lib/emblParse.c

|o*lib/errabort.c

|o*lib/errCatch.c

|o*lib/fa.c

|o*lib/ffAli.c

|o*lib/ffScore.c

|o*lib/filePath.c

|o*lib/fixColor.c

|o*lib/flydna.c

|o*lib/fof.c

|o*lib/fuzzyShow.c

|o*lib/gapCalc.c

|o*lib/gdf.c

|o*lib/gemfont.c

|o*lib/gemfont.h

|o*lib/gff.c

|o*lib/gfNet.c

|o*lib/gfxPoly.c

|o*lib/gifcodes.h

|o*lib/gifcomp.c

|o*lib/gifdecomp.c

|o*lib/gifLabel.c

|o*lib/gifread.c

|o*lib/gifwrite.c

|o*lib/hash.c

|o*lib/histogram.c

|o*lib/hmmPfamParse.c

|o*lib/hmmstats.c

|o*lib/htmlPage.c

|o*lib/htmshell.c

|o*lib/internet.c

|o*lib/intExp.c

|o*lib/jointalign.c

|o*lib/jpegSize.c

|o*lib/keys.c

|o*lib/kxTok.c

|o*lib/linefile.c

|o*lib/localmem.c

|o*lib/log.c

|o*lib/maf.c

|o*lib/mafFromAxt.c

|o*lib/mafScore.c

|o*lib/md5.c

|o*lib/memalloc.c

|o*lib/memgfx.c

|o*lib/mgCircle.c

|o*lib/mgHugeFont.c

|o*lib/mgLargeFont.c

|o*lib/mgMediumFont.c

|o*lib/mgPolygon.c

|o*lib/mgSmallFont.c

|o*lib/mgTinyFont.c

|o*lib/mime.c

|o*lib/net.c

|o*lib/nib.c

|o*lib/nibTwo.c

|o*lib/nt4.c

|o*lib/obscure.c

|o*lib/oldGff.c

|o*lib/oligoTm.c

|o*lib/options.c

|o*lib/osunix.c

|o*lib/oswin9x.c

|o*lib/pairHmm.c

|o*lib/phyloTree.c

|o*lib/pipeline.c

|o*lib/portimpl.c

|o*lib/portimpl.h

|o*lib/pscmGfx.c

|o*lib/psGfx.c

|o*lib/psl.c

|o*lib/pslGenoShow.c

|o*lib/pslShow.c

|o*lib/pslTbl.c

|o*lib/pslTransMap.c

|o*lib/psPoly.c

|o*lib/pthreadWrap.c

|o*lib/qa.c

|o*lib/quickHeap.c

|o*lib/quotedP.c

|o*lib/ra.c

|o*lib/rangeTree.c

|o*lib/rbTree.c

|o*lib/repMask.c

|o*lib/rle.c

|o*lib/rnautil.c

|o*lib/rudp.c

|o*lib/scoreWindow.c

|o*lib/seqOut.c

|o*lib/seqStats.c

|o*lib/servBrcMcw.c

|o*lib/servcis.c

|o*lib/servcl.c

|o*lib/servCrunx.c

|o*lib/servmsII.c

|o*lib/servpws.c

|o*lib/shaRes.c

|o*lib/slog.c

|o*lib/snof.c

|o*lib/snofmake.c

|o*lib/snofsig.c

|o*lib/spacedColumn.c

|o*lib/spacedSeed.c

|o*lib/spaceSaver.c

|o*lib/sqlList.c

|o*lib/sqlNum.c

|o*lib/subText.c

|o*lib/synQueue.c

|o*lib/tabRow.c

|o*lib/textOut.c

|o*lib/tokenizer.c

|o*lib/trix.c

|o*lib/twoBit.c

|o*lib/verbose.c

|o*lib/vGfx.c

|o*lib/vGfxPrivate.h

|o*lib/vGif.c

|o*lib/wildcmp.c

|o*lib/wormdna.c

|o*lib/xa.c

|o*lib/xAli.c

|o*lib/xap.c

|o*lib/xenshow.c

|o*lib/xmlEscape.c

|o*lib/xp.c

|\*webBlat/webBlat.c

\*Globals