xaAli Struct Reference

#include <xa.h>

Collaboration diagram for xaAli:

[legend]

Data Fields
xaAli *	next
char *	name
char *	query
int	qStart
int	qEnd
char	qStrand
char *	target
int	tStart
int	tEnd
char	tStrand
int	milliScore
int	symCount
char *	qSym
char *	tSym
char *	hSym

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Detailed Description

Definition at line 10 of file xa.h.

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Field Documentation

struct xaAli* xaAli::next [read]

Definition at line 13 of file xa.h.

Referenced by xaAliFreeList().

char* xaAli::name

Definition at line 14 of file xa.h.

Referenced by xaAliFree(), and xaReadNext().

char* xaAli::query

Definition at line 15 of file xa.h.

Referenced by xaAliFree(), and xaReadNext().

int xaAli::qStart

Definition at line 16 of file xa.h.

Referenced by xaReadNext().

int xaAli::qEnd

Definition at line 16 of file xa.h.

Referenced by xaReadNext().

char xaAli::qStrand

Definition at line 17 of file xa.h.

Referenced by xaReadNext().

char* xaAli::target

Definition at line 18 of file xa.h.

Referenced by xaAliCmpTarget(), xaAliFree(), and xaReadNext().

int xaAli::tStart

Definition at line 19 of file xa.h.

Referenced by xaAliCmpTarget(), and xaReadNext().

int xaAli::tEnd

Definition at line 19 of file xa.h.

Referenced by xaReadNext().

char xaAli::tStrand

Definition at line 20 of file xa.h.

Referenced by xaReadNext().

int xaAli::milliScore

Definition at line 21 of file xa.h.

Referenced by xaReadNext().

int xaAli::symCount

Definition at line 22 of file xa.h.

Referenced by xaReadNext().

char* xaAli::qSym

Definition at line 23 of file xa.h.

Referenced by xaAliFree(), and xaReadNext().

char * xaAli::tSym

Definition at line 23 of file xa.h.

Referenced by xaAliFree(), and xaReadNext().

char * xaAli::hSym

Definition at line 23 of file xa.h.

Referenced by xaAliFree(), and xaReadNext().

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The documentation for this struct was generated from the following file:

• inc/xa.h

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