xAli Struct Reference

#include <xAli.h>

Collaboration diagram for xAli:

[legend]

Data Fields
xAli *	next
unsigned	match
unsigned	misMatch
unsigned	repMatch
unsigned	nCount
unsigned	qNumInsert
int	qBaseInsert
unsigned	tNumInsert
int	tBaseInsert
char	strand [3]
char *	qName
unsigned	qSize
unsigned	qStart
unsigned	qEnd
char *	tName
unsigned	tSize
unsigned	tStart
unsigned	tEnd
unsigned	blockCount
unsigned *	blockSizes
unsigned *	qStarts
unsigned *	tStarts
char **	qSeq
char **	tSeq

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Detailed Description

Definition at line 8 of file xAli.h.

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Field Documentation

struct xAli* xAli::next [read]

Definition at line 11 of file xAli.h.

Referenced by xAliFreeList().

unsigned xAli::match

Definition at line 12 of file xAli.h.

Referenced by xAliLoad(), and xAliOutput().

unsigned xAli::misMatch

Definition at line 13 of file xAli.h.

Referenced by xAliLoad(), and xAliOutput().

unsigned xAli::repMatch

Definition at line 14 of file xAli.h.

Referenced by xAliLoad(), and xAliOutput().

unsigned xAli::nCount

Definition at line 15 of file xAli.h.

Referenced by xAliLoad(), and xAliOutput().

unsigned xAli::qNumInsert

Definition at line 16 of file xAli.h.

Referenced by xAliLoad(), and xAliOutput().

int xAli::qBaseInsert

Definition at line 17 of file xAli.h.

Referenced by xAliLoad(), and xAliOutput().

unsigned xAli::tNumInsert

Definition at line 18 of file xAli.h.

Referenced by xAliLoad(), and xAliOutput().

int xAli::tBaseInsert

Definition at line 19 of file xAli.h.

Referenced by xAliLoad(), and xAliOutput().

char xAli::strand[3]

Definition at line 20 of file xAli.h.

Referenced by xAliLoad(), and xAliOutput().

char* xAli::qName

Definition at line 21 of file xAli.h.

Referenced by xAliFree(), xAliLoad(), and xAliOutput().

unsigned xAli::qSize

Definition at line 22 of file xAli.h.

Referenced by xAliLoad(), and xAliOutput().

unsigned xAli::qStart

Definition at line 23 of file xAli.h.

Referenced by xAliLoad(), and xAliOutput().

unsigned xAli::qEnd

Definition at line 24 of file xAli.h.

Referenced by xAliLoad(), and xAliOutput().

char* xAli::tName

Definition at line 25 of file xAli.h.

Referenced by xAliFree(), xAliLoad(), and xAliOutput().

unsigned xAli::tSize

Definition at line 26 of file xAli.h.

Referenced by xAliLoad(), and xAliOutput().

unsigned xAli::tStart

Definition at line 27 of file xAli.h.

Referenced by xAliLoad(), and xAliOutput().

unsigned xAli::tEnd

Definition at line 28 of file xAli.h.

Referenced by xAliLoad(), and xAliOutput().

unsigned xAli::blockCount

Definition at line 29 of file xAli.h.

Referenced by xAliLoad(), and xAliOutput().

unsigned* xAli::blockSizes

Definition at line 30 of file xAli.h.

Referenced by xAliFree(), xAliLoad(), and xAliOutput().

unsigned* xAli::qStarts

Definition at line 31 of file xAli.h.

Referenced by xAliFree(), xAliLoad(), and xAliOutput().

unsigned* xAli::tStarts

Definition at line 32 of file xAli.h.

Referenced by xAliFree(), xAliLoad(), and xAliOutput().

char** xAli::qSeq

Definition at line 33 of file xAli.h.

Referenced by xAliFree(), xAliLoad(), and xAliOutput().

char** xAli::tSeq

Definition at line 34 of file xAli.h.

Referenced by xAliFree(), xAliLoad(), and xAliOutput().

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The documentation for this struct was generated from the following file:

• inc/xAli.h

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