trans3 Struct Reference

#include <trans3.h>

Collaboration diagram for trans3:

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Data Fields
trans3 *	next
char *	name
dnaSeq *	seq
aaSeq *	trans [3]
int	start
int	end
int	nibSize
boolean	isRc

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Detailed Description

Definition at line 23 of file trans3.h.

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Field Documentation

struct trans3* trans3::next [read]

Definition at line 26 of file trans3.h.

Referenced by trans3Find(), trans3FreeList(), trans3Offset(), and trans3Offsets().

char* trans3::name

Definition at line 27 of file trans3.h.

Referenced by trans3New().

struct dnaSeq* trans3::seq [read]

Definition at line 28 of file trans3.h.

Referenced by gfAlignTrans(), gfAlignTransTrans(), gfFindAlignAaTrans(), trans3GenoPos(), trans3New(), trans3Offset(), trans3Offsets(), transCountBothStrands(), transTransQuery(), and untranslateRangeList().

aaSeq* trans3::trans[3]

Definition at line 29 of file trans3.h.

Referenced by gfAlignTrans(), gfAlignTransTrans(), gfTransTransFindBundles(), trans3Free(), trans3New(), trans3Offset(), trans3Offsets(), transCountBothStrands(), transIndexBothStrands(), and transTransQuery().

int trans3::start

Definition at line 30 of file trans3.h.

Referenced by gfAlignTrans(), loadHashT3Ranges(), trans3Find(), trans3Offset(), and trans3Offsets().

int trans3::end

Definition at line 30 of file trans3.h.

Referenced by gfAlignTrans(), loadHashT3Ranges(), trans3Find(), and trans3New().

int trans3::nibSize

Definition at line 31 of file trans3.h.

Referenced by gfAlignTrans(), and loadHashT3Ranges().

boolean trans3::isRc

Definition at line 32 of file trans3.h.

Referenced by bigBlat(), loadHashT3Ranges(), and transIndexBothStrands().

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The documentation for this struct was generated from the following file:

• inc/trans3.h

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