phmmAliPair Struct Reference

Collaboration diagram for phmmAliPair:

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Data Fields
phmmAliPair *	next
int	queryIx
int	targetIx
UBYTE	hiddenIx
char	querySym
char	targetSym
char	hiddenSym

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Detailed Description

Definition at line 122 of file pairHmm.c.

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Field Documentation

struct phmmAliPair* phmmAliPair::next [read]

Definition at line 125 of file pairHmm.c.

Referenced by phhmTraceToAxt(), and phmmPrintTrace().

int phmmAliPair::queryIx

Definition at line 126 of file pairHmm.c.

Referenced by phhmTraceToAxt(), and phmmPrintTrace().

int phmmAliPair::targetIx

Definition at line 127 of file pairHmm.c.

Referenced by phhmTraceToAxt(), and phmmPrintTrace().

UBYTE phmmAliPair::hiddenIx

Definition at line 128 of file pairHmm.c.

char phmmAliPair::querySym

Definition at line 129 of file pairHmm.c.

Referenced by phhmTraceToAxt(), and phmmPrintTrace().

char phmmAliPair::targetSym

Definition at line 130 of file pairHmm.c.

Referenced by phhmTraceToAxt(), and phmmPrintTrace().

char phmmAliPair::hiddenSym

Definition at line 131 of file pairHmm.c.

Referenced by phmmPrintTrace().

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The documentation for this struct was generated from the following file:

• lib/pairHmm.c

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