patSpace Struct Reference

Collaboration diagram for patSpace:

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Data Fields
psBits **	lists
psBits *	listSizes
psBits *	allocated
int	blocksUsed
int	posBuf [maxBlockCount]
int	hitBlocks [maxBlockCount]
blockPos	blockPos [maxBlockCount]
psBits	maxPat
int	minMatch
int	maxGap
int	seedSize
int	seedSpaceSize

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Detailed Description

Definition at line 48 of file patSpace.c.

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Field Documentation

psBits** patSpace::lists

Definition at line 52 of file patSpace.c.

Referenced by addToPatSpace(), allocPatSpaceLists(), newPatSpace(), and patSpaceFindOne().

psBits* patSpace::listSizes

Definition at line 53 of file patSpace.c.

Referenced by addToPatSpace(), allocPatSpaceLists(), countPatSpace(), makePatSpace(), newPatSpace(), and patSpaceFindOne().

psBits* patSpace::allocated

Definition at line 54 of file patSpace.c.

Referenced by allocPatSpaceLists(), and freePatSpace().

int patSpace::blocksUsed

Definition at line 55 of file patSpace.c.

Referenced by makePatSpace(), and patSpaceFindOne().

int patSpace::posBuf[maxBlockCount]

Definition at line 56 of file patSpace.c.

Referenced by patSpaceFindOne().

int patSpace::hitBlocks[maxBlockCount]

Definition at line 57 of file patSpace.c.

Referenced by patSpaceFindOne().

struct blockPos patSpace::blockPos[maxBlockCount] [read]

Definition at line 58 of file patSpace.c.

Referenced by addToPatSpace(), and bfFind().

psBits patSpace::maxPat

Definition at line 59 of file patSpace.c.

Referenced by addToPatSpace(), allocPatSpaceLists(), and makePatSpace().

int patSpace::minMatch

Definition at line 61 of file patSpace.c.

Referenced by newPatSpace(), and patSpaceFindOne().

int patSpace::maxGap

Definition at line 63 of file patSpace.c.

Referenced by clumpHits(), and newPatSpace().

int patSpace::seedSize

Definition at line 64 of file patSpace.c.

Referenced by addToPatSpace(), countPatSpace(), makePatSpace(), newPatSpace(), and patSpaceFindOne().

int patSpace::seedSpaceSize

Definition at line 65 of file patSpace.c.

Referenced by addToPatSpace(), allocPatSpaceLists(), countPatSpace(), makePatSpace(), and newPatSpace().

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The documentation for this struct was generated from the following file:

• jkOwnLib/patSpace.c

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