hgAlignment Struct Reference

#include <hgap.h>

Collaboration diagram for hgAlignment:

[legend]

Data Fields
hgAlignment *	next
int	tStart
int	tEnd
int	tOrientation
char *	target
int	logOdds
int	qStart
int	qEnd
int	qOrientation
bool	hardStart
bool	hardEnd
hgBoundedHit *	hitList

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Detailed Description

Definition at line 217 of file hgap.h.

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Field Documentation

struct hgAlignment* hgAlignment::next [read]

Definition at line 220 of file hgap.h.

int hgAlignment::tStart

Definition at line 221 of file hgap.h.

int hgAlignment::tEnd

Definition at line 221 of file hgap.h.

int hgAlignment::tOrientation

Definition at line 222 of file hgap.h.

char* hgAlignment::target

Definition at line 223 of file hgap.h.

int hgAlignment::logOdds

Definition at line 224 of file hgap.h.

int hgAlignment::qStart

Definition at line 225 of file hgap.h.

int hgAlignment::qEnd

Definition at line 225 of file hgap.h.

int hgAlignment::qOrientation

Definition at line 226 of file hgap.h.

bool hgAlignment::hardStart

Definition at line 227 of file hgap.h.

bool hgAlignment::hardEnd

Definition at line 228 of file hgap.h.

struct hgBoundedHit* hgAlignment::hitList [read]

Definition at line 229 of file hgap.h.

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The documentation for this struct was generated from the following file:

• inc/hgap.h

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