gffFile Struct Reference

#include <gff.h>

Collaboration diagram for gffFile:

[legend]

Data Fields
gffFile *	next
char *	fileName
hash *	seqHash
hash *	sourceHash
hash *	featureHash
hash *	groupHash
hash *	geneIdHash
hash *	exonHash
hash *	intronStatusHash
hash *	proteinIdHash
gffLine *	lineList
gffSeqName *	seqList
gffSource *	sourceList
gffFeature *	featureList
gffGroup *	groupList
gffGeneId *	geneIdList
bool	isGtf
bool	typeKnown

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Detailed Description

Definition at line 75 of file gff.h.

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Field Documentation

struct gffFile* gffFile::next [read]

Definition at line 78 of file gff.h.

char* gffFile::fileName

Definition at line 79 of file gff.h.

Referenced by gffFileFree(), and gffFileNew().

struct hash* gffFile::seqHash [read]

Definition at line 80 of file gff.h.

Referenced by gffFileAddRow(), gffFileFree(), and gffFileNew().

struct hash* gffFile::sourceHash [read]

Definition at line 81 of file gff.h.

Referenced by gffFileAddRow(), gffFileFree(), and gffFileNew().

struct hash* gffFile::featureHash [read]

Definition at line 82 of file gff.h.

Referenced by gffFileAddRow(), gffFileFree(), and gffFileNew().

struct hash* gffFile::groupHash [read]

Definition at line 83 of file gff.h.

Referenced by gffFileAddRow(), gffFileFree(), gffFileNew(), gffGroupLines(), and parseGtfEnd().

struct hash* gffFile::geneIdHash [read]

Definition at line 84 of file gff.h.

Referenced by gffFileFree(), gffFileNew(), and parseGtfEnd().

struct hash* gffFile::exonHash [read]

Definition at line 85 of file gff.h.

Referenced by gffFileFree(), gffFileNew(), and parseGtfEnd().

struct hash* gffFile::intronStatusHash [read]

Definition at line 86 of file gff.h.

Referenced by gffFileFree(), gffFileNew(), and parseGtfEnd().

struct hash* gffFile::proteinIdHash [read]

Definition at line 87 of file gff.h.

Referenced by gffFileFree(), gffFileNew(), and parseGtfEnd().

struct gffLine* gffFile::lineList [read]

Definition at line 88 of file gff.h.

Referenced by gffFileAdd(), gffFileAddRow(), gffFileFree(), and gffGroupLines().

struct gffSeqName* gffFile::seqList [read]

Definition at line 89 of file gff.h.

Referenced by gffFileAdd(), gffFileAddRow(), and gffFileFree().

struct gffSource* gffFile::sourceList [read]

Definition at line 90 of file gff.h.

Referenced by gffFileAdd(), gffFileAddRow(), and gffFileFree().

struct gffFeature* gffFile::featureList [read]

Definition at line 91 of file gff.h.

Referenced by gffFileAdd(), gffFileAddRow(), and gffFileFree().

struct gffGroup* gffFile::groupList [read]

Definition at line 92 of file gff.h.

Referenced by gffFileAdd(), gffFileAddRow(), gffFileFree(), gffGroupLines(), and parseGtfEnd().

struct gffGeneId* gffFile::geneIdList [read]

Definition at line 93 of file gff.h.

Referenced by gffFileAdd(), gffFileFree(), and parseGtfEnd().

bool gffFile::isGtf

Definition at line 94 of file gff.h.

Referenced by gffFileAddRow().

bool gffFile::typeKnown

Definition at line 95 of file gff.h.

Referenced by gffFileAddRow().

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The documentation for this struct was generated from the following file:

• inc/gff.h

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