gff Struct Reference

#include <oldGff.h>

Collaboration diagram for gff:

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Data Fields
char	fileName [256]
FILE *	file
long	fileSize
char	buf [256]
int	bufSize
int	bytesInBuf
int	readIx
int	lineNumber
lm *	memPool
char *	dna
long	dnaSize
char	dnaName [128]
gffGene *	genes

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Detailed Description

Definition at line 13 of file oldGff.h.

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Field Documentation

char gff::fileName[256]

Definition at line 17 of file oldGff.h.

Referenced by checkWordCount(), gffPrintInfo(), and gffReadGenes().

FILE* gff::file

Definition at line 18 of file oldGff.h.

Referenced by _gffGetLine(), _gffSeekDna(), and gffClose().

long gff::fileSize

Definition at line 19 of file oldGff.h.

Referenced by gffReadDna().

char gff::buf[256]

Definition at line 20 of file oldGff.h.

Referenced by _gffGetLine(), _gffSeekDna(), _gffSeekDoubleSharpLine(), checkWordCount(), gffNextDnaLine(), gffReadDna(), gffReadGenes(), and gffSegLineScan().

int gff::bufSize

Definition at line 21 of file oldGff.h.

Referenced by _gffGetLine().

int gff::bytesInBuf

Definition at line 22 of file oldGff.h.

Referenced by _gffGetLine(), _gffSeekDna(), _gffSeekDoubleSharpLine(), gffNextDnaLine(), and gffReadDna().

int gff::readIx

Definition at line 23 of file oldGff.h.

Referenced by _gffGetLine(), and gffReadDna().

int gff::lineNumber

Definition at line 24 of file oldGff.h.

Referenced by _gffGetLine(), checkWordCount(), and gffReadGenes().

struct lm* gff::memPool [read]

Definition at line 25 of file oldGff.h.

Referenced by gffClose(), and gffNeedMem().

char* gff::dna

Definition at line 26 of file oldGff.h.

Referenced by geneDna(), gffClose(), gffReadDna(), and gffReadDnaSeq().

long gff::dnaSize

Definition at line 27 of file oldGff.h.

Referenced by geneDna(), gffPrintInfo(), gffReadDna(), and gffReadDnaSeq().

char gff::dnaName[128]

Definition at line 28 of file oldGff.h.

Referenced by _gffSeekDna(), gffPrintInfo(), and gffReadDnaSeq().

struct gffGene* gff::genes [read]

Definition at line 29 of file oldGff.h.

Referenced by gffFindGene(), gffFindGeneIgnoreCase(), gffPrintInfo(), and gffReadGenes().

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The documentation for this struct was generated from the following file:

• inc/oldGff.h

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