gfRange Struct Reference

#include <gfInternal.h>

Collaboration diagram for gfRange:

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Data Fields
gfRange *	next
int	qStart
int	qEnd
char *	tName
dnaSeq *	tSeq
int	tStart
int	tEnd
gfRange *	components
int	hitCount
int	frame
trans3 *	t3
int	tTotalSize
char	tStrand

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Detailed Description

Definition at line 4 of file gfInternal.h.

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Field Documentation

struct gfRange* gfRange::next [read]

Definition at line 9 of file gfInternal.h.

Referenced by alignComponents(), gfRangeFreeList(), gfRangesBundle(), gfRangesToFfItem(), loadHashT3Ranges(), rangeCoorTimes3(), rangeScore(), and untranslateRangeList().

int gfRange::qStart

Definition at line 10 of file gfInternal.h.

Referenced by alignComponents(), clumpToExactRange(), gfiExpandRange(), gfRangeLoad(), gfRangesToFfItem(), rangeCoorTimes3(), rangeScore(), and untranslateRangeList().

int gfRange::qEnd

Definition at line 11 of file gfInternal.h.

Referenced by alignComponents(), clumpToExactRange(), clumpToHspRange(), gfiExpandRange(), gfRangeLoad(), gfRangesToFfItem(), rangeCoorTimes3(), and untranslateRangeList().

char* gfRange::tName

Definition at line 12 of file gfInternal.h.

Referenced by clumpToExactRange(), gfiExpandAndLoadCached(), gfRangeCmpTarget(), gfRangeFree(), gfRangeLoad(), and loadHashT3Ranges().

struct dnaSeq* gfRange::tSeq [read]

Definition at line 13 of file gfInternal.h.

Referenced by clumpToExactRange(), clumpToHspRange(), gfRangesToFfItem(), rangeScore(), and untranslateRangeList().

int gfRange::tStart

Definition at line 14 of file gfInternal.h.

Referenced by alignComponents(), clumpToExactRange(), clumpToHspRange(), gfiExpandAndLoadCached(), gfiExpandRange(), gfRangeCmpTarget(), gfRangeLoad(), gfRangesToFfItem(), loadHashT3Ranges(), rangeCoorTimes3(), rangeScore(), and untranslateRangeList().

int gfRange::tEnd

Definition at line 15 of file gfInternal.h.

Referenced by alignComponents(), clumpToExactRange(), clumpToHspRange(), gfiExpandAndLoadCached(), gfiExpandRange(), gfRangeLoad(), gfRangesToFfItem(), loadHashT3Ranges(), rangeCoorTimes3(), rangeScore(), and untranslateRangeList().

struct gfRange* gfRange::components [read]

Definition at line 16 of file gfInternal.h.

Referenced by alignComponents(), gfRangeFree(), and rangeScore().

int gfRange::hitCount

Definition at line 17 of file gfInternal.h.

Referenced by clumpToExactRange(), and gfRangeLoad().

int gfRange::frame

Definition at line 18 of file gfInternal.h.

Referenced by clumpToExactRange().

struct trans3* gfRange::t3 [read]

Definition at line 19 of file gfInternal.h.

Referenced by clumpToExactRange(), clumpToHspRange(), gfRangeCmpTarget(), loadHashT3Ranges(), and untranslateRangeList().

int gfRange::tTotalSize

Definition at line 20 of file gfInternal.h.

Referenced by loadHashT3Ranges().

char gfRange::tStrand

Definition at line 21 of file gfInternal.h.

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The documentation for this struct was generated from the following file:

• jkOwnLib/gfInternal.h

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