dnaMotif Struct Reference

#include <dnaMotif.h>

Collaboration diagram for dnaMotif:

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Data Fields
dnaMotif *	next
char *	name
int	columnCount
float *	aProb
float *	cProb
float *	gProb
float *	tProb

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Detailed Description

Definition at line 12 of file dnaMotif.h.

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Field Documentation

struct dnaMotif* dnaMotif::next [read]

Definition at line 15 of file dnaMotif.h.

Referenced by dnaMotifFreeList().

char* dnaMotif::name

Definition at line 16 of file dnaMotif.h.

Referenced by dnaMotifFree(), dnaMotifNormalize(), and dnaMotifOutput().

int dnaMotif::columnCount

Definition at line 17 of file dnaMotif.h.

Referenced by dnaMotifBestStrand(), dnaMotifBitScore(), dnaMotifBitsOfInfo(), dnaMotifDims(), dnaMotifIsScoreBased(), dnaMotifNormalize(), dnaMotifOutput(), dnaMotifPrintProb(), dnaMotifScoreToProb(), dnaMotifSequenceProb(), dnaMotifToLogoPs(), and dnaMotifToLogoPsW().

float* dnaMotif::aProb

Definition at line 18 of file dnaMotif.h.

Referenced by dnaMotifFree(), dnaMotifIsScoreBased(), dnaMotifNormalize(), dnaMotifOutput(), dnaMotifPrintProb(), dnaMotifScoreToProb(), dnaMotifSequenceProb(), letterProbFromMotifColumn(), and uncertainty().

float* dnaMotif::cProb

Definition at line 19 of file dnaMotif.h.

Referenced by dnaMotifFree(), dnaMotifIsScoreBased(), dnaMotifNormalize(), dnaMotifOutput(), dnaMotifPrintProb(), dnaMotifScoreToProb(), dnaMotifSequenceProb(), letterProbFromMotifColumn(), and uncertainty().

float* dnaMotif::gProb

Definition at line 20 of file dnaMotif.h.

Referenced by dnaMotifFree(), dnaMotifIsScoreBased(), dnaMotifNormalize(), dnaMotifOutput(), dnaMotifPrintProb(), dnaMotifScoreToProb(), dnaMotifSequenceProb(), letterProbFromMotifColumn(), and uncertainty().

float* dnaMotif::tProb

Definition at line 21 of file dnaMotif.h.

Referenced by dnaMotifFree(), dnaMotifIsScoreBased(), dnaMotifNormalize(), dnaMotifOutput(), dnaMotifPrintProb(), dnaMotifScoreToProb(), dnaMotifSequenceProb(), letterProbFromMotifColumn(), and uncertainty().

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The documentation for this struct was generated from the following file:

• inc/dnaMotif.h

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