Data Fields | |
| char * | name |
| char * | queryFile |
| char * | query |
| int | qStart |
| int | qEnd |
| int | qOffset |
| int | qEndOffset |
| char | qStrand |
| char * | target |
| int | tStart |
| int | tEnd |
| int | tOffset |
| int | tEndOffset |
| char | tStrand |
| int | score |
| char * | qSym |
| char * | tSym |
| char * | hSym |
| int | symCount |
| boolean | isComplete |
Definition at line 18 of file xenbig.c.
| char* contig::name |
Definition at line 21 of file xenbig.c.
Referenced by freeContig(), mergeContigs(), and writeContig().
| char* contig::queryFile |
Definition at line 22 of file xenbig.c.
Referenced by forwardMergeTwo(), writeContig(), and xStitch().
| char* contig::query |
Definition at line 23 of file xenbig.c.
Referenced by checkComplete(), contigEncompassedBefore(), forwardMergeTwo(), mergeContigs(), mergeIntoAdjacentClusters(), writeContig(), and xStitch().
| int contig::qStart |
Definition at line 24 of file xenbig.c.
Referenced by checkComplete(), cmpContigQueryStart(), contigEncompassedBefore(), contigsOverlap(), forwardMergeTwo(), mergeContigs(), mergeTwo(), rcContigOffsets(), rcQueryOffsetsAroundSeg(), writeContig(), and xStitch().
| int contig::qEnd |
Definition at line 24 of file xenbig.c.
Referenced by checkComplete(), cmpContigQueryStart(), contigEncompassedBefore(), contigsOverlap(), forwardMergeTwo(), mergeContigs(), mergeTwo(), rcContigOffsets(), rcQueryOffsetsAroundSeg(), writeContig(), and xStitch().
| int contig::qOffset |
Definition at line 25 of file xenbig.c.
Referenced by mergeContigs(), mergeIntoAdjacentClusters(), and xStitch().
Definition at line 25 of file xenbig.c.
Referenced by mergeContigs(), mergeIntoAdjacentClusters(), and xStitch().
| char contig::qStrand |
Definition at line 26 of file xenbig.c.
Referenced by checkComplete(), contigEncompassedBefore(), forwardMergeTwo(), mergeContigs(), mergeIntoAdjacentClusters(), mergeTwo(), writeContig(), and xStitch().
| char* contig::target |
Definition at line 27 of file xenbig.c.
Referenced by checkComplete(), contigEncompassedBefore(), forwardMergeTwo(), freeContig(), mergeContigs(), mergeIntoAdjacentClusters(), writeContig(), and xStitch().
| int contig::tStart |
Definition at line 28 of file xenbig.c.
Referenced by checkComplete(), contigEncompassedBefore(), contigsOverlap(), forwardMergeTwo(), mergeContigs(), mergeTwo(), rcContigOffsets(), writeContig(), and xStitch().
| int contig::tEnd |
Definition at line 28 of file xenbig.c.
Referenced by checkComplete(), contigEncompassedBefore(), contigsOverlap(), forwardMergeTwo(), mergeContigs(), mergeTwo(), rcContigOffsets(), writeContig(), and xStitch().
| int contig::tOffset |
Definition at line 29 of file xenbig.c.
Referenced by mergeContigs(), mergeIntoAdjacentClusters(), and xStitch().
Definition at line 29 of file xenbig.c.
Referenced by mergeContigs(), mergeIntoAdjacentClusters(), and xStitch().
| char contig::tStrand |
Definition at line 30 of file xenbig.c.
Referenced by checkComplete(), contigEncompassedBefore(), forwardMergeTwo(), mergeContigs(), mergeIntoAdjacentClusters(), mergeTwo(), writeContig(), and xStitch().
| int contig::score |
Definition at line 31 of file xenbig.c.
Referenced by mergeContigs(), mergeIntoAdjacentClusters(), writeContig(), and xStitch().
| char* contig::qSym |
Definition at line 32 of file xenbig.c.
Referenced by forwardMergeTwo(), freeContig(), milliMatchScore(), writeContig(), and xStitch().
| char* contig::tSym |
Definition at line 33 of file xenbig.c.
Referenced by forwardMergeTwo(), freeContig(), milliMatchScore(), writeContig(), and xStitch().
| char* contig::hSym |
Definition at line 34 of file xenbig.c.
Referenced by forwardMergeTwo(), freeContig(), writeContig(), and xStitch().
| int contig::symCount |
Definition at line 35 of file xenbig.c.
Referenced by forwardMergeTwo(), milliMatchScore(), writeContig(), and xStitch().
| boolean contig::isComplete |
1.5.2