cluster Struct Reference

Collaboration diagram for cluster:

[legend]

Data Fields
dlList *	contigs
char *	query
int	qStart
int	qEnd
int	qOffset
int	qEndOffset
char	qStrand
char *	target
int	tStart
int	tEnd
int	tOffset
int	tEndOffset
char	tStrand
int	score
box *	boxList
dlNode *	node

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Detailed Description

Local data structures.

Definition at line 192 of file xenbig.c.

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Field Documentation

struct dlList* cluster::contigs [read]

Definition at line 195 of file xenbig.c.

Referenced by clusterRemoveEncompassed(), mergeContigs(), mergeIntoAdjacentClusters(), and mergeWithinCluster().

char* cluster::query

Definition at line 196 of file xenbig.c.

Referenced by clusterEncompassedBefore(), and mergeIntoAdjacentClusters().

int cluster::qStart

Definition at line 197 of file xenbig.c.

Referenced by clusterEncompassedBefore().

int cluster::qEnd

Definition at line 197 of file xenbig.c.

Referenced by clusterEncompassedBefore().

int cluster::qOffset

Definition at line 198 of file xenbig.c.

int cluster::qEndOffset

Definition at line 198 of file xenbig.c.

Referenced by mergeIntoAdjacentClusters().

char cluster::qStrand

Definition at line 199 of file xenbig.c.

Referenced by clusterEncompassedBefore(), and mergeIntoAdjacentClusters().

char* cluster::target

Definition at line 200 of file xenbig.c.

Referenced by clusterEncompassedBefore(), and mergeIntoAdjacentClusters().

int cluster::tStart

Definition at line 201 of file xenbig.c.

Referenced by clusterEncompassedBefore().

int cluster::tEnd

Definition at line 201 of file xenbig.c.

Referenced by clusterEncompassedBefore().

int cluster::tOffset

Definition at line 202 of file xenbig.c.

Referenced by mergeIntoAdjacentClusters().

int cluster::tEndOffset

Definition at line 202 of file xenbig.c.

Referenced by mergeIntoAdjacentClusters().

char cluster::tStrand

Definition at line 203 of file xenbig.c.

Referenced by clusterEncompassedBefore(), and mergeIntoAdjacentClusters().

int cluster::score

Definition at line 204 of file xenbig.c.

Referenced by mergeContigs(), and mergeIntoAdjacentClusters().

struct box* cluster::boxList [read]

Definition at line 52 of file boxClump.c.

Referenced by boxFindClumps(), and mergeClusters().

struct dlNode* cluster::node [read]

Definition at line 53 of file boxClump.c.

Referenced by boxFindClumps(), clusterEncompassedBefore(), clusterRemoveEncompassed(), and mergeClusters().

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The documentation for this struct was generated from the following files:

• jkOwnLib/xenbig.c
• lib/boxClump.c

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