chainConnect Struct Reference

#include <chainConnect.h>

Collaboration diagram for chainConnect:

[legend]

Data Fields
dnaSeq *	query
dnaSeq *	target
axtScoreScheme *	ss
gapCalc *	gapCalc

---

Detailed Description

Definition at line 8 of file chainConnect.h.

---

Field Documentation

struct dnaSeq* chainConnect::query [read]

Definition at line 11 of file chainConnect.h.

Referenced by chainConnectCost().

struct dnaSeq* chainConnect::target [read]

Definition at line 12 of file chainConnect.h.

Referenced by chainConnectCost().

struct axtScoreScheme* chainConnect::ss [read]

Definition at line 13 of file chainConnect.h.

Referenced by chainConnectCost().

struct gapCalc* chainConnect::gapCalc [read]

Definition at line 14 of file chainConnect.h.

Referenced by chainConnectCost(), and chainConnectGapCost().

---

The documentation for this struct was generated from the following file:

• inc/chainConnect.h

---