cBlock Struct Reference

#include <chain.h>

Collaboration diagram for cBlock:

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Data Fields
cBlock *	next
int	tStart
int	tEnd
int	qStart
int	qEnd
int	score
void *	data

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Detailed Description

Definition at line 17 of file chain.h.

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Field Documentation

struct cBlock* cBlock::next [read]

Definition at line 20 of file chain.h.

Referenced by axtFromBlocks(), cBlocksAddOffset(), chainBlocks(), chainFastSubsetOnT(), chainMergeAbutting(), chainRemovePartialOverlaps(), chainSubsetOnQ(), chainSubsetOnT(), chainSwap(), chainToAxt(), chainToPsl(), chainWrite(), chainWriteLong(), checkChainGaps(), checkChainIncreases(), checkStartBeforeEnd(), fillInMatchEtc(), removeNegativeBlocks(), scoreBlocks(), setChainBounds(), and ssFindBestBig().

int cBlock::tStart

Definition at line 21 of file chain.h.

Referenced by axtAddBlocksToBoxInList(), axtFromBlocks(), cBlockCmpBoth(), cBlockCmpDiagQuery(), cBlockCmpTarget(), cBlockFindCrossover(), cBlocksAddOffset(), chainBlocks(), chainCalcBounds(), chainCalcScore(), chainCalcScoreSubChain(), chainConnectCost(), chainFastSubsetOnT(), chainReadBlocks(), chainRemovePartialOverlaps(), chainSubsetOnQ(), chainSwap(), chainToAxt(), chainToPsl(), chainWrite(), chainWriteLong(), checkChainGaps(), checkChainIncreases(), checkStartBeforeEnd(), fillInMatchEtc(), findOverlap(), kdLeafCmpT(), medianVal(), setChainBounds(), ssConnectCost(), and updateScoresOnWay().

int cBlock::tEnd

Definition at line 21 of file chain.h.

Referenced by axtAddBlocksToBoxInList(), axtFromBlocks(), cBlockFindCrossover(), cBlocksAddOffset(), chainBlocks(), chainCalcBounds(), chainConnectCost(), chainFastSubsetOnT(), chainReadBlocks(), chainRemovePartialOverlaps(), chainSubsetOnQ(), chainSubsetOnT(), chainSwap(), chainToPsl(), chainWrite(), chainWriteLong(), checkChainGaps(), checkStartBeforeEnd(), findOverlap(), kdBuild(), peelChains(), setChainBounds(), and ssConnectCost().

int cBlock::qStart

Definition at line 22 of file chain.h.

Referenced by axtAddBlocksToBoxInList(), axtFromBlocks(), cBlockCmpBoth(), cBlockCmpDiagQuery(), cBlockFindCrossover(), cBlocksAddOffset(), chainCalcBounds(), chainCalcScore(), chainCalcScoreSubChain(), chainConnectCost(), chainFastSubsetOnT(), chainReadBlocks(), chainRemovePartialOverlaps(), chainSubsetOnQ(), chainSwap(), chainToAxt(), chainToPsl(), chainWrite(), chainWriteLong(), checkChainGaps(), checkChainIncreases(), checkStartBeforeEnd(), fillInMatchEtc(), findOverlap(), kdLeafCmpQ(), medianVal(), setChainBounds(), ssConnectCost(), and updateScoresOnWay().

int cBlock::qEnd

Definition at line 22 of file chain.h.

Referenced by axtAddBlocksToBoxInList(), axtFromBlocks(), cBlockFindCrossover(), cBlocksAddOffset(), chainCalcBounds(), chainConnectCost(), chainFastSubsetOnT(), chainReadBlocks(), chainRemovePartialOverlaps(), chainSubsetOnQ(), chainSwap(), chainToPsl(), chainWrite(), chainWriteLong(), checkChainGaps(), checkStartBeforeEnd(), fillInMatchEtc(), findOverlap(), kdBuild(), peelChains(), setChainBounds(), and ssConnectCost().

int cBlock::score

Definition at line 23 of file chain.h.

Referenced by chainBlocks(), scoreBlocks(), and ssConnectCost().

void* cBlock::data

Definition at line 24 of file chain.h.

Referenced by ssConnectCost().

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The documentation for this struct was generated from the following file:

• inc/chain.h

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