baf Struct Reference

#include <seqOut.h>

Data Fields
char	nChars [256]
char	hChars [256]
int	cix
int	nLineStart
int	hLineStart
int	nCurPos
int	hCurPos
DNA *	needle
DNA *	haystack
int	nNumOff
int	hNumOff
FILE *	out
int	lineSize
bool	hCountDown
bool	isTrans
bool	nCountDown

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Detailed Description

Definition at line 46 of file seqOut.h.

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Field Documentation

char baf::nChars[256]

Definition at line 49 of file seqOut.h.

Referenced by bafOut(), and bafWriteLine().

char baf::hChars[256]

Definition at line 50 of file seqOut.h.

Referenced by bafOut(), and bafWriteLine().

int baf::cix

Definition at line 51 of file seqOut.h.

Referenced by bafFlushLine(), bafInit(), bafOut(), and bafWriteLine().

int baf::nLineStart

Definition at line 52 of file seqOut.h.

Referenced by bafInit(), bafOut(), bafStartLine(), and bafWriteLine().

int baf::hLineStart

Definition at line 53 of file seqOut.h.

Referenced by bafInit(), bafOut(), bafStartLine(), and bafWriteLine().

int baf::nCurPos

Definition at line 54 of file seqOut.h.

Referenced by bafInit(), bafOut(), bafSetAli(), bafSetPos(), bafStartLine(), and bafWriteLine().

int baf::hCurPos

Definition at line 55 of file seqOut.h.

Referenced by bafInit(), bafOut(), bafSetAli(), bafSetPos(), bafStartLine(), and bafWriteLine().

DNA* baf::needle

Definition at line 56 of file seqOut.h.

Referenced by bafInit(), and bafSetAli().

DNA * baf::haystack

Definition at line 56 of file seqOut.h.

Referenced by bafInit(), and bafSetAli().

int baf::nNumOff

Definition at line 57 of file seqOut.h.

Referenced by bafInit(), and bafWriteLine().

int baf::hNumOff

Definition at line 57 of file seqOut.h.

Referenced by bafInit(), and bafWriteLine().

FILE* baf::out

Definition at line 58 of file seqOut.h.

Referenced by bafFlushLine(), bafInit(), and bafWriteLine().

int baf::lineSize

Definition at line 59 of file seqOut.h.

Referenced by bafInit(), and bafOut().

bool baf::hCountDown

Definition at line 60 of file seqOut.h.

Referenced by bafInit(), and bafWriteLine().

bool baf::isTrans

Definition at line 61 of file seqOut.h.

Referenced by bafInit(), bafSetPos(), and bafWriteLine().

bool baf::nCountDown

Definition at line 62 of file seqOut.h.

Referenced by bafInit(), and bafWriteLine().

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The documentation for this struct was generated from the following file:

• inc/seqOut.h

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