axt Struct Reference

#include <axt.h>

Collaboration diagram for axt:

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Data Fields
axt *	next
char *	qName
int	qStart
int	qEnd
char	qStrand
char *	tName
int	tStart
int	tEnd
char	tStrand
int	score
int	symCount
char *	qSym
char *	tSym
int	frame

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Detailed Description

Definition at line 35 of file axt.h.

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Field Documentation

struct axt* axt::next [read]

Definition at line 38 of file axt.h.

Referenced by axtFreeList(), axtQueryOut(), bundleIntoTargets(), mafQueryOut(), and sim4QueryOut().

char* axt::qName

Definition at line 39 of file axt.h.

Referenced by axtCmpQuery(), axtFree(), axtFromBlocks(), axtReadWithPos(), axtSwap(), axtWrite(), mafFromAxt(), mafFromAxtTemp(), ncbiBlastOut(), phhmTraceToAxt(), saveAxtBundle(), sim4QueryOut(), tabBlastOut(), wuBlastOut(), and xmlBlastOut().

int axt::qStart

Definition at line 40 of file axt.h.

Referenced by axtAddBlocksToBoxInList(), axtCheck(), axtCmpQuery(), axtCoverage(), axtFromBlocks(), axtPrintTraditional(), axtReadWithPos(), axtSubsetOnT(), axtSwap(), axtTransPosToQ(), axtWrite(), blastiodAxtOutput(), calcDigitCount(), mafFromAxt(), mafFromAxtTemp(), phhmTraceToAxt(), saveAxtBundle(), sim4QueryOut(), tabBlastOut(), and xmlBlastOut().

int axt::qEnd

Definition at line 40 of file axt.h.

Referenced by axtCheck(), axtCoverage(), axtFromBlocks(), axtPrintTraditional(), axtReadWithPos(), axtSubsetOnT(), axtSwap(), axtWrite(), calcDigitCount(), mafFromAxt(), mafFromAxtTemp(), phhmTraceToAxt(), saveAxtBundle(), sim4QueryOut(), tabBlastOut(), and xmlBlastOut().

char axt::qStrand

Definition at line 41 of file axt.h.

Referenced by axtFromBlocks(), axtReadWithPos(), axtSwap(), axtWrite(), blastiodAxtOutput(), calcDigitCount(), mafFromAxt(), mafFromAxtTemp(), phhmTraceToAxt(), printAxtTargetBlastTab(), saveAxtBundle(), sim4QueryOut(), tabBlastOut(), and wuBlastOut().

char* axt::tName

Definition at line 42 of file axt.h.

Referenced by axtCmpTarget(), axtCmpTargetScoreDesc(), axtFree(), axtFromBlocks(), axtReadWithPos(), axtSwap(), axtWrite(), mafFromAxt(), mafFromAxtTemp(), phhmTraceToAxt(), saveAxtBundle(), sim4QueryOut(), and tabBlastOut().

int axt::tStart

Definition at line 43 of file axt.h.

Referenced by axtAddBlocksToBoxInList(), axtCheck(), axtCmpTarget(), axtCoverage(), axtFromBlocks(), axtPrintTraditional(), axtReadWithPos(), axtSubsetOnT(), axtSwap(), axtTransPosToQ(), axtWrite(), blastiodAxtOutput(), calcDigitCount(), mafFromAxt(), mafFromAxtTemp(), phhmTraceToAxt(), printAxtTargetBlastTab(), saveAxtBundle(), sim4QueryOut(), and xmlBlastOut().

int axt::tEnd

Definition at line 43 of file axt.h.

Referenced by axtCheck(), axtCoverage(), axtFromBlocks(), axtPrintTraditional(), axtReadWithPos(), axtSubsetOnT(), axtSwap(), axtWrite(), calcDigitCount(), mafFromAxt(), mafFromAxtTemp(), phhmTraceToAxt(), printAxtTargetBlastTab(), saveAxtBundle(), sim4QueryOut(), and xmlBlastOut().

char axt::tStrand

Definition at line 44 of file axt.h.

Referenced by axtFromBlocks(), axtReadWithPos(), axtSwap(), blastiodAxtOutput(), calcDigitCount(), mafFromAxt(), mafFromAxtTemp(), phhmTraceToAxt(), printAxtTargetBlastTab(), saveAxtBundle(), and wuBlastOut().

int axt::score

Definition at line 45 of file axt.h.

Referenced by axtCmpScore(), axtCmpTargetScoreDesc(), axtFromBlocks(), axtReadWithPos(), axtRefCmpScore(), axtSubsetOnT(), axtWrite(), mafFromAxt(), mafFromAxtTemp(), ncbiBlastOut(), phhmTraceToAxt(), saveAxtBundle(), tabBlastOut(), wuBlastOut(), and xmlBlastOut().

int axt::symCount

Definition at line 46 of file axt.h.

Referenced by axtAddBlocksToBoxInList(), axtCheck(), axtFromBlocks(), axtIdRatio(), axtIdWithGaps(), axtPrintTraditional(), axtReadWithPos(), axtScore(), axtScoreFilterRepeats(), axtSubsetOnT(), axtSwap(), axtWrite(), blastiodAxtOutput(), mafFromAxt(), mafFromAxtTemp(), ncbiBlastOut(), phhmTraceToAxt(), saveAxtBundle(), tabBlastOut(), and wuBlastOut().

char* axt::qSym

Definition at line 47 of file axt.h.

Referenced by axtAddBlocksToBoxInList(), axtCheck(), axtFree(), axtFromBlocks(), axtIdRatio(), axtIdWithGaps(), axtPrintTraditional(), axtReadWithPos(), axtScore(), axtScoreFilterRepeats(), axtSubsetOnT(), axtSwap(), axtTransPosToQ(), axtWrite(), blastiodAxtOutput(), mafFromAxt(), mafFromAxtTemp(), ncbiBlastOut(), phhmTraceToAxt(), saveAxtBundle(), tabBlastOut(), and wuBlastOut().

char * axt::tSym

Definition at line 47 of file axt.h.

Referenced by axtAddBlocksToBoxInList(), axtCheck(), axtFree(), axtFromBlocks(), axtIdRatio(), axtIdWithGaps(), axtPrintTraditional(), axtReadWithPos(), axtScore(), axtScoreFilterRepeats(), axtSubsetOnT(), axtSwap(), axtTransPosToQ(), axtWrite(), blastiodAxtOutput(), mafFromAxt(), mafFromAxtTemp(), ncbiBlastOut(), phhmTraceToAxt(), saveAxtBundle(), tabBlastOut(), and wuBlastOut().

int axt::frame

Definition at line 48 of file axt.h.

Referenced by ncbiBlastOut(), progType(), saveAxtBundle(), and wuBlastOut().

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The documentation for this struct was generated from the following file:

• inc/axt.h

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