00001 /* spacedSeed - stuff to help with spaced seeds for alignments. */ 00002 00003 #ifndef SPACEDSEED_H 00004 #define SPACEDSEED_H 00005 00006 extern char *spacedSeeds[]; 00007 /* Array of spaced seeds in format with '1' for cares, '0' for don't care. */ 00008 00009 int spacedSeedMaxWeight(); 00010 /* Return max weight of spaced seed. */ 00011 00012 int *spacedSeedOffsets(int weight); 00013 /* Return array with offsets for seed of given weight. */ 00014 00015 int spacedSeedSpan(int weight); 00016 /* Return span of seed of given weight */ 00017 00018 #endif /*SPACEDSEED_H */ 00019
1.5.2