blat: inc/pslTransMap.h Source File

00001 /* pslTransMap - transitive mapping of an alignment another sequence, via a
00002  * common alignment */
00003 #ifndef PSLTRANSMAP_H
00004 #define PSLTRANSMAP_H
00005 
00006 enum pslTransMapOpts
00007 /* option set for pslTransMap */
00008 {
00009     pslTransMapNoOpts     = 0x00,  /* no options */
00010     pslTransMapKeepTrans  = 0x01   /* keep translated alignment strand */
00011 };
00012 
00013 struct psl* pslTransMap(unsigned opts, struct psl *inPsl, struct psl *mapPsl);
00014 /* map a psl via a mapping psl, a single psl is returned, or NULL if it
00015  * couldn't be mapped. */
00016 
00017 #endif